RNA–Protein interactions for RNA: ENST00000411220.1

RNU4-88P-201, Transcript of RNA, U4 small nuclear 88, pseudogene, humanhuman

BASIC

Gene RNU4-88P, Length 86 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-88P-201ENST00000411220 ZNF295-AS1Q8N0V1 137 aa0.34□□□□□ -2.36
RNU4-88P-201ENST00000411220 FIBCD1Q8N539 461 aa0.34□□□□□ -2.36
RNU4-88P-201ENST00000411220 LARP4BQ92615 738 aaKnown RBP0.34□□□□□ -2.36
RNU4-88P-201ENST00000411220 PRRX2Q99811 253 aa0.34□□□□□ -2.36
RNU4-88P-201ENST00000411220 SLC2A4RGQ9NR83 387 aa0.34□□□□□ -2.36
RNU4-88P-201ENST00000411220 DYNC1LI2O43237 492 aaPredicted RBP0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 ARID4AP29374 1257 aaPredicted RBP0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 CDC25BP30305 580 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 TXLNAP40222 546 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 MLLT3P42568 568 aaPredicted RBP0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 NLRP12P59046 1061 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 GSG1LQ6UXU4 331 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 TSC1Q92574 1164 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 SMARCC1Q92922 1105 aaPredicted RBP0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 RIOX1Q9H6W3 641 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 CNTD2Q9H8S5 307 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZNF536O15090 1300 aa0.33□□□□□ -2.36
RNU4-88P-201ENST00000411220 SFI1A8K8P3 1242 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 GHRHP01286 108 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 TKTP29401 623 aaKnown RBP0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 NRLP54845 237 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 RNF20Q5VTR2 975 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 NPAS4Q8IUM7 802 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 MZB1Q8WU39 189 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 RBSNQ9H1K0 784 aa0.32□□□□□ -2.36
RNU4-88P-201ENST00000411220 A0A1B0GTL3 188 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 A6NHS1 94 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 GNPATO15228 680 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 TRHRP34981 398 aaPredicted RBP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 SOX4Q06945 474 aaPredicted RBP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 HDGFL2Q7Z4V5 671 aaPredicted RBP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 ADGRG3Q86Y34 549 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 ADGRG2Q8IZP9 1017 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 NLGN1Q8N2Q7 840 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 PIWIL2Q8TC59 973 aaKnown RBP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 TTPALQ9BTX7 342 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 CWC22Q9HCG8 908 aaKnown RBP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 TLR7Q9NYK1 1049 aaKnown RBP0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 PCDHB11Q9Y5F2 797 aa0.31□□□□□ -2.36
RNU4-88P-201ENST00000411220 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 MYADML2A6NDP7 307 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 NPEPPSL1A6NEC2 478 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 HRKO00198 91 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZBTB7BO15156 539 aaPredicted RBP0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 GTPBP6O43824 516 aaPredicted RBP0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 CDC27P30260 824 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 PLCB3Q01970 1234 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 NRN1LQ496H8 165 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZNF627Q7L945 461 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZBTB3Q9H5J0 574 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 ETNK1Q9HBU6 452 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 METTL14Q9HCE5 456 aaKnown RBP0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 CABP1Q9NZU7 370 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 ANKIB1Q9P2G1 1089 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 YBX2Q9Y2T7 364 aaKnown RBP0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 MMP24Q9Y5R2 645 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 KLF2Q9Y5W3 355 aaPredicted RBP0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 OTOGLQ3ZCN5 2332 aa0.3□□□□□ -2.36
RNU4-88P-201ENST00000411220 H3BNC9 293 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 J3QW42 95 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 EML1O00423 815 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 NTN3O00634 580 aaPredicted RBP0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 TBC1D4O60343 1298 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZNF517Q6ZMY9 492 aaPredicted RBP0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 SPACA3Q8IXA5 215 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 DNERQ8NFT8 737 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 EDAQ92838 391 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 SLAMF8Q9P0V8 285 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 ACTL7BQ9Y614 415 aa0.29□□□□□ -2.36
RNU4-88P-201ENST00000411220 LOC102724428A0A0B4J2F2 783 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 OR14I1A6ND48 311 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 PRSS47A8MTI9 375 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 FOXN1O15353 648 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 MYCP01106 439 aaPredicted RBP0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 CLCN7P51798 805 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 CDR1P51861 262 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 HK2P52789 917 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 SIK1P57059 783 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 VWA3BQ502W6 1294 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 IGDCC3Q8IVU1 814 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 LILRA2Q8N149 483 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 PPP1R13LQ8WUF5 828 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 C7orf43Q8WVR3 580 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 SPIRE2Q8WWL2 714 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 WNT8BQ93098 351 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 SLC29A3Q9BZD2 475 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 TXLNGQ9NUQ3 528 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZFATQ9P243 1243 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 ZNHIT2Q9UHR6 403 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 DAGLAQ9Y4D2 1042 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 PARP3Q9Y6F1 533 aa0.28□□□□□ -2.36
RNU4-88P-201ENST00000411220 SYNE2Q8WXH0 6885 aaKnown RBP0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 OPLAHO14841 1288 aa0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 LMNAP02545 664 aaKnown RBP0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 KRT4P19013 534 aa0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 CDK5R2Q13319 367 aa0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 SF3B4Q15427 424 aaKnown RBP eCLIP0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 PLEKHN1Q494U1 663 aaPredicted RBP0.27□□□□□ -2.37
RNU4-88P-201ENST00000411220 LCE3CQ5T5A8 94 aa0.27□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms