RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 TYW1Q9NV66 732 aaKnown RBP8.75□□□□□ -1.01
SYNE1-210ENST00000409694 POTEB3A0JP26 581 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 GCKP35557 465 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 ESRRGP62508 458 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 RAPGEF1Q13905 1077 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 TMEM132EQ6IEE7 984 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 PDXDC1Q6P996 788 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 POTEBQ6S5H4 581 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 HACE1Q8IYU2 909 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 CABS1Q96KC9 395 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 NUTM2BA6NNL0 878 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 NUTM2EB1AL46 878 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 PFDN1O60925 122 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 FAM69CQ0P6D2 419 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 PLS1Q14651 629 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 ANKLE2Q86XL3 938 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 FNBP4Q8N3X1 1017 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 PAWRQ96IZ0 340 aaKnown RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 POLE3Q9NRF9 147 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 KLF18A0A0U1RQI7 1052 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 EIF3CLB5ME19 914 aaKnown RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 E9PMD0 336 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 S100BP04271 92 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 TNFAIP3P21580 790 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 LMNB2Q03252 620 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 NLRP7Q8WX94 980 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 EIF3CQ99613 913 aaKnown RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 CABP1Q9NZU7 370 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 DIXDC1Q155Q3 683 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 TBC1D9Q6ZT07 1266 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 CSRNP1Q96S65 589 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 MIS12Q9H081 205 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 PTPN23Q9H3S7 1636 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 RNASELQ05823 741 aaKnown RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 GIMAP6Q6P9H5 292 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 MYCBPQ99417 103 aaPredicted RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 TBC1D2Q9BYX2 928 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 ZC3H6P61129 1189 aaKnown RBP8.74□□□□□ -1.01
SYNE1-210ENST00000409694 CASC4Q6P4E1 433 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 OSCARQ8IYS5 282 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 CUL7Q14999 1698 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 ASIC3Q9UHC3 531 aa8.74□□□□□ -1.01
SYNE1-210ENST00000409694 TRIM37O94972 964 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 TBC1D8O95759 1140 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 KRT15P19012 456 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 BIRC3Q13489 604 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 JADE1Q6IE81 842 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 PDZD4Q76G19 769 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 KRT12Q99456 494 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 RIOK1Q9BRS2 568 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 KIFC3Q9BVG8 833 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 DDX21Q9NR30 783 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 TRIM60Q495X7 471 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 C16orf71Q8IYS4 520 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 PANK2Q9BZ23 570 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 EVCP57679 992 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 SYNRGQ9UMZ2 1314 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 FAM71BQ8TC56 605 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 SPDL1Q96EA4 605 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 NYXQ9GZU5 481 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 APOEP02649 317 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 FAM160A1Q05DH4 1040 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 MCMDC2Q4G0Z9 681 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 SND1Q7KZF4 910 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 SECISBP2LQ93073 1101 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 TRIM6Q9C030 488 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 DAAM1Q9Y4D1 1078 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 TIAM1Q13009 1591 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 LRRD1A4D1F6 860 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 GNA14O95837 355 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 SLC9C1Q4G0N8 1177 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 EP400NLQ6ZTU2 488 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 PROCA1Q8NCQ7 364 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 ZNF526Q8TF50 670 aaPredicted RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 NOC4LQ9BVI4 516 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 MRPL46Q9H2W6 279 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 ATAD2BQ9ULI0 1458 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 TMCO4Q5TGY1 634 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 HOMER3Q9NSC5 361 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 GOLGA8KD6RF30 607 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 F13A1P00488 732 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 KRT9P35527 623 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 GARSP41250 739 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 CCDC186Q7Z3E2 898 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 SPATS2LQ9NUQ6 558 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 TFIP11Q9UBB9 837 aaKnown RBP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 XRCC6P12956 609 aaKnown RBP eCLIP8.73□□□□□ -1.01
SYNE1-210ENST00000409694 DHX58Q96C10 678 aa8.73□□□□□ -1.01
SYNE1-210ENST00000409694 EFCAB14O75071 495 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 RLBP1P12271 317 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 LMNB1P20700 586 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 TNNI2P48788 182 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 CCDC138Q96M89 665 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 AMOTL2Q9Y2J4 779 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 MAN1A2O60476 641 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 RABEP2Q9H5N1 569 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 USP48Q86UV5 1035 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 RSAD2Q8WXG1 361 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 CTNND2Q9UQB3 1225 aa8.72□□□□□ -1.01
SYNE1-210ENST00000409694 CNPY2Q9Y2B0 182 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms