RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 GRPEL1Q9HAV7 217 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 RBM28Q9NW13 759 aaKnown RBP10.46□□□□□ -0.74
LIG4-202ENST00000405925 RIPOR2Q9Y4F9 1068 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 CAMTA1Q9Y6Y1 1673 aa10.46□□□□□ -0.74
LIG4-202ENST00000405925 hCG_1642624A0A1W2PR95 340 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 CLRN2A0PK11 232 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 TRIM75PA6NK02 468 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 BIN1O00499 593 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 CHMP4BP1P59074 171 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 ME3Q16798 604 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 DALRD3Q5D0E6 543 aaKnown RBP10.45□□□□□ -0.74
LIG4-202ENST00000405925 PLA2G12BQ9BX93 195 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 TNS2Q63HR2 1409 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 ADAMTSL3P82987 1691 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 USP42Q9H9J4 1324 aaKnown RBP10.45□□□□□ -0.74
LIG4-202ENST00000405925 CYP2E1P05181 493 aaPredicted RBP10.45□□□□□ -0.74
LIG4-202ENST00000405925 ATP8A2Q9NTI2 1148 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 NRXN3Q9Y4C0 1643 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 TNKSO95271 1327 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 OFD1O75665 1012 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 CHRNA5P30532 468 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 SLC1A4P43007 532 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 PLS1Q14651 629 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 EZH2Q15910 746 aaKnown RBP10.45□□□□□ -0.74
LIG4-202ENST00000405925 USP48Q86UV5 1035 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 SMARCC2Q8TAQ2 1214 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 KCNG4Q8TDN1 519 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 CEP89Q96ST8 783 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 ZSWIM6Q9HCJ5 1215 aa10.45□□□□□ -0.74
LIG4-202ENST00000405925 IDEP14735 1019 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 MECOMQ03112 1051 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 PDE4CQ08493 712 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 SCARF1Q14162 830 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 SF3B3Q15393 1217 aaKnown RBP10.44□□□□□ -0.74
LIG4-202ENST00000405925 ZNF654Q8IZM8 581 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 COA1Q9GZY4 146 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 SH2D4AQ9H788 454 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 ARHGEF10LQ9HCE6 1279 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 BCL9O00512 1426 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 UBN2Q6ZU65 1347 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 R3HDM1Q15032 1099 aaKnown RBP10.44□□□□□ -0.74
LIG4-202ENST00000405925 CD209Q9NNX6 404 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 PICK1Q9NRD5 415 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 PIM2Q9P1W9 311 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 CLIP2Q9UDT6 1046 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 DEXIO95424 95 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 CSF1RP07333 972 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 GNA11P29992 359 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 ZNF592Q92610 1267 aa10.44□□□□□ -0.74
LIG4-202ENST00000405925 SPTLC2O15270 562 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 KRT2P35908 639 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 TNFAIP1Q13829 316 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 KLHL40Q2TBA0 621 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 LLPHQ9BRT6 129 aaKnown RBP10.43□□□□□ -0.74
LIG4-202ENST00000405925 TPCN1Q9ULQ1 816 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 SAMM50Q9Y512 469 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 SPDYE3A6NKU9 549 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 ECM2O94769 699 aaPredicted RBP10.43□□□□□ -0.74
LIG4-202ENST00000405925 BMP15O95972 392 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 ADD1P35611 737 aaKnown RBP10.43□□□□□ -0.74
LIG4-202ENST00000405925 CALML4Q96GE6 196 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 ANO10Q9NW15 660 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 SYKP43405 635 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 EAPPQ56P03 285 aaPredicted RBP10.43□□□□□ -0.74
LIG4-202ENST00000405925 ISM2Q6H9L7 571 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 CMTR1Q8N1G2 835 aaKnown RBP10.43□□□□□ -0.74
LIG4-202ENST00000405925 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.43□□□□□ -0.74
LIG4-202ENST00000405925 TANGO6Q9C0B7 1094 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 CYP2D7A0A087X1C5 515 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 CTAGE5O15320 804 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 DPY19L2Q6NUT2 758 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 DIS3L2Q8IYB7 885 aaKnown RBP10.43□□□□□ -0.74
LIG4-202ENST00000405925 RTKN2Q8IZC4 609 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 UBA5Q9GZZ9 404 aa10.43□□□□□ -0.74
LIG4-202ENST00000405925 BRAPQ7Z569 592 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 MRPS27Q92552 414 aaKnown RBP10.42□□□□□ -0.74
LIG4-202ENST00000405925 GTF3C6Q969F1 213 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 KAZALD1Q96I82 304 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 TAOK3Q9H2K8 898 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 DACT1Q9NYF0 836 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 PXDNLA1KZ92 1463 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 FMN2Q9NZ56 1722 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 GPSM2P81274 684 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 GIMAP6Q6P9H5 292 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 FILIP1Q7Z7B0 1213 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 PNMA1Q8ND90 353 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 FAM84BQ96KN1 310 aaPredicted RBP10.42□□□□□ -0.74
LIG4-202ENST00000405925 ZSCAN10Q96SZ4 725 aaPredicted RBP10.42□□□□□ -0.74
LIG4-202ENST00000405925 KNDC1Q76NI1 1749 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 USP17L3A6NCW0 530 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 USP17L4A6NCW7 530 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 USP17L8P0C7I0 530 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 SLC15A2Q16348 729 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 USP17L1Q7RTZ2 530 aa10.42□□□□□ -0.74
LIG4-202ENST00000405925 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.42□□□□□ -0.74
LIG4-202ENST00000405925 MCM7P33993 719 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 LRRC47Q8N1G4 583 aaKnown RBP10.41□□□□□ -0.74
LIG4-202ENST00000405925 SLC4A9Q96Q91 983 aa10.41□□□□□ -0.74
LIG4-202ENST00000405925 STRBPQ96SI9 672 aaKnown RBP10.41□□□□□ -0.74
LIG4-202ENST00000405925 MYCNP04198 464 aaPredicted RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms