RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TBC1D2BQ9UPU7 963 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 CEP170Q5SW79 1584 aa10.48□□□□□ -0.73
COL28A1-201ENST00000399429 PPP1R12BO60237 982 aaPredicted RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 SLC8A1P32418 973 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 UBLCP1Q8WVY7 318 aaPredicted RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 TCP11Q8WWU5 503 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 VWA3AA6NCI4 1184 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 MYO1FO00160 1098 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 PCK1P35558 622 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 CTNND2Q9UQB3 1225 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 ATP10BO94823 1461 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 SYNRGQ9UMZ2 1314 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 A0A1W2PQ27 194 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 A0A1W2PQ64 194 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 A0A1W2PQD8 194 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 TMEM67Q5HYA8 995 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 TRIM68Q6AZZ1 485 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 MPRIPQ6WCQ1 1025 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 ZNF589Q86UQ0 364 aaPredicted RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 LINC00301Q8NCQ3 95 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 NSUN7Q8NE18 718 aaKnown RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 PPP1R12CQ9BZL4 782 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 KAT14Q9H8E8 782 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 SAMSN1Q9NSI8 373 aaKnown RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 RTEL1Q9NZ71 1219 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 TRPM1Q7Z4N2 1603 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 VIMP08670 466 aaKnown RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 GIGYF2Q6Y7W6 1299 aaKnown RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 SPATS2Q86XZ4 545 aaKnown RBP10.47□□□□□ -0.73
COL28A1-201ENST00000399429 CD248Q9HCU0 757 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 SERTAD1Q9UHV2 236 aa10.47□□□□□ -0.73
COL28A1-201ENST00000399429 URB2Q14146 1524 aaKnown RBP10.46□□□□□ -0.73
COL28A1-201ENST00000399429 GRM8O00222 908 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 ZBTB43O43298 467 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 PFKFB2O60825 505 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 SRGAP2O75044 1071 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 ZRSR2Q15696 482 aaKnown RBP10.46□□□□□ -0.73
COL28A1-201ENST00000399429 UBE3BQ7Z3V4 1068 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 ABTB2Q8N961 1025 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 PHKBQ93100 1093 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 EAF2Q96CJ1 260 aaPredicted RBP10.46□□□□□ -0.73
COL28A1-201ENST00000399429 PUS7Q96PZ0 661 aaKnown RBP10.46□□□□□ -0.73
COL28A1-201ENST00000399429 DNAJC5BQ9UF47 199 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 PLXNC1O60486 1568 aa10.46□□□□□ -0.73
COL28A1-201ENST00000399429 PRPF4BQ13523 1007 aaKnown RBP10.46□□□□□ -0.74
COL28A1-201ENST00000399429 CACNA2D3Q8IZS8 1091 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 SAMD15Q9P1V8 674 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 EID1Q9Y6B2 187 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 LAMC3Q9Y6N6 1575 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 NCKAP5LQ9HCH0 1330 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 PLEKHG2Q9H7P9 1386 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 ZPR1O75312 459 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 TOB2Q14106 344 aaPredicted RBP10.46□□□□□ -0.74
COL28A1-201ENST00000399429 KIRREL3Q8IZU9 778 aa10.46□□□□□ -0.74
COL28A1-201ENST00000399429 FMR1NBQ8N0W7 255 aaPredicted RBP10.46□□□□□ -0.74
COL28A1-201ENST00000399429 ZKSCAN8Q15776 578 aaPredicted RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 VPS37DQ86XT2 251 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 SPDL1Q96EA4 605 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 PNKPQ96T60 521 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 SELENOOQ9BVL4 669 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 GJB4Q9NTQ9 266 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 STK38LQ9Y2H1 464 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 NEFHP12036 1026 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 SLC7A5Q01650 507 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 BEND6Q5SZJ8 279 aaPredicted RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 HIBCHQ6NVY1 386 aaPredicted RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC170Q8IYT3 715 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 RPGRIP1Q96KN7 1286 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 PAIP2Q9BPZ3 127 aaKnown RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 MMRN2Q9H8L6 949 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 KLC4Q9NSK0 619 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 EPN1Q9Y6I3 576 aaPredicted RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 ATP5J2-PTCD1G3V325 749 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 GCOM1H8Y6P7 765 aaPredicted RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 PTCD1O75127 700 aaKnown RBP10.45□□□□□ -0.74
COL28A1-201ENST00000399429 MYZAPP0CAP1 466 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 C2orf54Q08AI8 447 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 NNTQ13423 1086 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC6Q16204 474 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 IFT20Q8IY31 132 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 SBNO1A3KN83 1393 aa10.45□□□□□ -0.74
COL28A1-201ENST00000399429 EIF4E1BA6NMX2 242 aaKnown RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 WASLO00401 505 aaPredicted RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 CYP21A2P08686 494 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 ARID5AQ03989 594 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 NAIF1Q69YI7 327 aaPredicted RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 REXO1L1PQ8IX06 675 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 PRPF38AQ8NAV1 312 aaKnown RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 CCDC43Q96MW1 224 aaKnown RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 C19orf44Q9H6X5 657 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 SLC52A1Q9NWF4 448 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 TFCP2Q12800 502 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 PLEKHO1Q53GL0 409 aaPredicted RBP10.44□□□□□ -0.74
COL28A1-201ENST00000399429 KRT40Q6A162 431 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 GRAMD1CQ8IYS0 662 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 A0A087WZG4 1122 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 TAF5LO75529 589 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 IRAK1P51617 712 aa10.44□□□□□ -0.74
COL28A1-201ENST00000399429 LACTBP83111 547 aaPredicted RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms