RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 RFX7Q2KHR2 1363 aa17.02■□□□□ 0.32
SEC13-204ENST00000397099 SPDYE5A6NIY4 337 aa17.02■□□□□ 0.32
SEC13-204ENST00000397099 IGF2BP3O00425 579 aaKnown RBP eCLIP17.02■□□□□ 0.32
SEC13-204ENST00000397099 WDHD1O75717 1129 aaPredicted RBP17.02■□□□□ 0.32
SEC13-204ENST00000397099 NFIAQ12857 509 aa17.02■□□□□ 0.32
SEC13-204ENST00000397099 TTF1Q15361 905 aaPredicted RBP17.02■□□□□ 0.32
SEC13-204ENST00000397099 NAA16Q6N069 864 aaPredicted RBP17.02■□□□□ 0.32
SEC13-204ENST00000397099 PI16Q6UXB8 463 aa17.02■□□□□ 0.32
SEC13-204ENST00000397099 TBC1D9Q6ZT07 1266 aa17.02■□□□□ 0.32
SEC13-204ENST00000397099 ZNF112Q9UJU3 913 aa17.02■□□□□ 0.32
SEC13-204ENST00000397099 CYP2E1P05181 493 aaPredicted RBP17.01■□□□□ 0.31
SEC13-204ENST00000397099 IFIT2P09913 472 aaKnown RBP17.01■□□□□ 0.31
SEC13-204ENST00000397099 RGS19P49795 217 aa17.01■□□□□ 0.31
SEC13-204ENST00000397099 SOX10P56693 466 aa17.01■□□□□ 0.31
SEC13-204ENST00000397099 PPATQ06203 517 aa17.01■□□□□ 0.31
SEC13-204ENST00000397099 ZSCAN29Q8IWY8 852 aaPredicted RBP17.01■□□□□ 0.31
SEC13-204ENST00000397099 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.01■□□□□ 0.31
SEC13-204ENST00000397099 ZCCHC17Q9NP64 241 aaKnown RBP17.01■□□□□ 0.31
SEC13-204ENST00000397099 HPS5Q9UPZ3 1129 aa17.01■□□□□ 0.31
SEC13-204ENST00000397099 ATRNL1Q5VV63 1379 aa17.01■□□□□ 0.31
SEC13-204ENST00000397099 ZAP70P43403 619 aa17■□□□□ 0.31
SEC13-204ENST00000397099 RHBDL3P58872 404 aa17■□□□□ 0.31
SEC13-204ENST00000397099 PPP4CP60510 307 aa17■□□□□ 0.31
SEC13-204ENST00000397099 MAP3K10Q02779 954 aa17■□□□□ 0.31
SEC13-204ENST00000397099 PPIL2Q13356 520 aa17■□□□□ 0.31
SEC13-204ENST00000397099 SIRT2Q8IXJ6 389 aa17■□□□□ 0.31
SEC13-204ENST00000397099 CNKSR2Q8WXI2 1034 aa17■□□□□ 0.31
SEC13-204ENST00000397099 OTUD5Q96G74 571 aa17■□□□□ 0.31
SEC13-204ENST00000397099 SNRKQ9NRH2 765 aa17■□□□□ 0.31
SEC13-204ENST00000397099 TBC1D12O60347 775 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 CETPP11597 493 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 MAP3K12Q12852 859 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 SNAPC2Q13487 334 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 NOL9Q5SY16 702 aaKnown RBP16.99■□□□□ 0.31
SEC13-204ENST00000397099 C20orf194Q5TEA3 1177 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 MIGA2Q7L4E1 593 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 ZNF384Q8TF68 577 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 DHX36Q9H2U1 1008 aaKnown RBP16.99■□□□□ 0.31
SEC13-204ENST00000397099 SNCAIPQ9Y6H5 919 aa16.99■□□□□ 0.31
SEC13-204ENST00000397099 CRHR2Q13324 411 aa16.98■□□□□ 0.31
SEC13-204ENST00000397099 TEX11Q8IYF3 940 aa16.98■□□□□ 0.31
SEC13-204ENST00000397099 ZKSCAN4Q969J2 545 aaPredicted RBP16.98■□□□□ 0.31
SEC13-204ENST00000397099 MS4A4AQ96JQ5 239 aa16.98■□□□□ 0.31
SEC13-204ENST00000397099 PTPN18Q99952 460 aa16.98■□□□□ 0.31
SEC13-204ENST00000397099 IL1RAPL2Q9NP60 686 aa16.98■□□□□ 0.31
SEC13-204ENST00000397099 TLR7Q9NYK1 1049 aaKnown RBP16.98■□□□□ 0.31
SEC13-204ENST00000397099 MYO5AQ9Y4I1 1855 aaKnown RBP16.97■□□□□ 0.31
SEC13-204ENST00000397099 CCL15-CCL14A0A0B4J2E2 113 aa16.97■□□□□ 0.31
SEC13-204ENST00000397099 PICALMQ13492 652 aa16.97■□□□□ 0.31
SEC13-204ENST00000397099 CCL15Q16663 113 aa16.97■□□□□ 0.31
SEC13-204ENST00000397099 FBXO46Q6PJ61 603 aaPredicted RBP16.97■□□□□ 0.31
SEC13-204ENST00000397099 LRRCC1Q9C099 1032 aa16.97■□□□□ 0.31
SEC13-204ENST00000397099 HERC5Q9UII4 1024 aaKnown RBP16.97■□□□□ 0.31
SEC13-204ENST00000397099 TRIM17Q9Y577 477 aa16.97■□□□□ 0.31
SEC13-204ENST00000397099 FOCADQ5VW36 1801 aa16.97■□□□□ 0.31
SEC13-204ENST00000397099 CTNND1O60716 968 aaKnown RBP16.96■□□□□ 0.31
SEC13-204ENST00000397099 IDH1O75874 414 aaKnown RBP16.96■□□□□ 0.31
SEC13-204ENST00000397099 RRP1P56182 461 aaKnown RBP16.96■□□□□ 0.31
SEC13-204ENST00000397099 AAMPQ13685 434 aa16.96■□□□□ 0.31
SEC13-204ENST00000397099 ERO1AQ96HE7 468 aa16.96■□□□□ 0.31
SEC13-204ENST00000397099 TBC1D2Q9BYX2 928 aa16.96■□□□□ 0.31
SEC13-204ENST00000397099 OSBPL5Q9H0X9 879 aaPredicted RBP16.96■□□□□ 0.31
SEC13-204ENST00000397099 DDX4Q9NQI0 724 aaKnown RBP16.96■□□□□ 0.31
SEC13-204ENST00000397099 PICK1Q9NRD5 415 aa16.96■□□□□ 0.31
SEC13-204ENST00000397099 CXCL11O14625 94 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 INPP5BP32019 993 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 ARHGEF6Q15052 776 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 ZFPM1Q8IX07 1006 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 SCYL3Q8IZE3 742 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 BRI3BPQ8WY22 251 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 PIH1D3Q9NQM4 214 aaKnown RBP16.95■□□□□ 0.3
SEC13-204ENST00000397099 AATFQ9NY61 560 aaKnown RBP eCLIP16.95■□□□□ 0.3
SEC13-204ENST00000397099 PI4KBQ9UBF8 816 aa16.95■□□□□ 0.3
SEC13-204ENST00000397099 DDTLA6NHG4 134 aaPredicted RBP16.94■□□□□ 0.3
SEC13-204ENST00000397099 PHF20L1A8MW92 1017 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 APBB1O00213 710 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 CYP7A1P22680 504 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 TAF1CQ15572 869 aaPredicted RBP16.94■□□□□ 0.3
SEC13-204ENST00000397099 SH3BP5LQ7L8J4 393 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 CD99L2Q8TCZ2 262 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 DCTPP1Q9H773 170 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 ZFYVE28Q9HCC9 887 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 KCNH4Q9UQ05 1017 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 DOCK1Q14185 1865 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 CDK5RAP2Q96SN8 1893 aa16.94■□□□□ 0.3
SEC13-204ENST00000397099 IRF6O14896 467 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 ATP5JP18859 108 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 SP3Q02447 781 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 OTOP1Q7RTM1 612 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 MAGEB6Q8N7X4 407 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 SH3RF3Q8TEJ3 882 aaPredicted RBP16.93■□□□□ 0.3
SEC13-204ENST00000397099 GPATCH3Q96I76 525 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 GINM1Q9NU53 330 aa16.93■□□□□ 0.3
SEC13-204ENST00000397099 HLA-DOAP06340 250 aa16.92■□□□□ 0.3
SEC13-204ENST00000397099 FASTKD5Q7L8L6 764 aaKnown RBP16.92■□□□□ 0.3
SEC13-204ENST00000397099 FOXP4Q8IVH2 680 aaPredicted RBP16.92■□□□□ 0.3
SEC13-204ENST00000397099 FAM43AQ8N2R8 423 aa16.92■□□□□ 0.3
SEC13-204ENST00000397099 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.92■□□□□ 0.39e-8■■□□□ 11.6
SEC13-204ENST00000397099 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.92■□□□□ 0.3
SEC13-204ENST00000397099 ANKRD23Q86SG2 305 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms