RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CDC37L1Q7L3B6 337 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 DZIP1Q86YF9 867 aaKnown RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 LCORLQ8N3X6 602 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 SH3RF3Q8TEJ3 882 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 HERC5Q9UII4 1024 aaKnown RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 TESPA1A2RU30 521 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 G3V3G9 751 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 CYP7A1P22680 504 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 DIXDC1Q155Q3 683 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 DCAF8Q5TAQ9 597 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 C12orf60Q5U649 245 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 C16orf86Q6ZW13 317 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 SAMD7Q7Z3H4 446 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 ESYT1Q9BSJ8 1104 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 IL25Q9H293 177 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 TCP11L1Q9NUJ3 509 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 LRP2BPQ9P2M1 347 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 ARPP21Q9UBL0 812 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 NMIQ13287 307 aaPredicted RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 PELP1Q8IZL8 1130 aaKnown RBP8.45□□□□□ -1.06
LIMA1-202ENST00000394943 ANKS1AQ92625 1134 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 CFHR5Q9BXR6 569 aa8.45□□□□□ -1.06
LIMA1-202ENST00000394943 ORC4O43929 436 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 CDC45O75419 566 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 YY1P25490 414 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 CHAF1AQ13111 956 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 TSHZ3Q63HK5 1081 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 FOXP4Q8IVH2 680 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 NBPF3Q9H094 633 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 ALDH8A1Q9H2A2 487 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 RBBP6Q7Z6E9 1792 aaKnown RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 GPAA1O43292 621 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 DNAJC18Q9H819 358 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 SWAP70Q9UH65 585 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 IQSEC3Q9UPP2 1182 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 TLL2Q9Y6L7 1015 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 ASTN2O75129 1339 aaPredicted RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 MYH4Q9Y623 1939 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 TNNI2P48788 182 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 NECTIN1Q15223 517 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 C8orf34Q49A92 452 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 DNAJC2Q99543 621 aaKnown RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 CRNKL1Q9BZJ0 848 aaKnown RBP8.44□□□□□ -1.06
LIMA1-202ENST00000394943 USP40Q9NVE5 1235 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 GJA3Q9Y6H8 435 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 NDUFB9Q9Y6M9 179 aa8.44□□□□□ -1.06
LIMA1-202ENST00000394943 HSPD1P10809 573 aaKnown RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 CTR9Q6PD62 1173 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 ZNF589Q86UQ0 364 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 STAG1Q8WVM7 1258 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 GGA3Q9NZ52 723 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 RAI14Q9P0K7 980 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 RASSF10A6NK89 507 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 MYO1BO43795 1136 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 DYNLL1P63167 89 aaKnown RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 ANGEL2Q5VTE6 544 aaKnown RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 RUFY2Q8WXA3 655 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 CDCA5Q96FF9 252 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 ZBTB47Q9UFB7 747 aaPredicted RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 NFIAQ12857 509 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 CST9Q5W186 159 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 FAM227BQ96M60 508 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 FSD1Q9BTV5 496 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 TDRD3Q9H7E2 651 aaKnown RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 ZCCHC17Q9NP64 241 aaKnown RBP8.43□□□□□ -1.06
LIMA1-202ENST00000394943 TACC3Q9Y6A5 838 aa8.43□□□□□ -1.06
LIMA1-202ENST00000394943 USP2O75604 605 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-202ENST00000394943 CHGBP05060 677 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 TBC1D10BQ4KMP7 808 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-202ENST00000394943 IFNL3Q8IZI9 196 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 DEFB129Q9H1M3 183 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 GPBP1L1Q9HC44 474 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-202ENST00000394943 MBD4O95243 580 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 POTEIP0CG38 1075 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 POTEJP0CG39 1038 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 RGS3P49796 1198 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 SH3D19Q5HYK7 790 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 KLRG1Q96E93 195 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 DDTLA6NHG4 134 aaPredicted RBP8.42□□□□□ -1.06
LIMA1-202ENST00000394943 IDH1O75874 414 aaKnown RBP8.42□□□□□ -1.06
LIMA1-202ENST00000394943 ZFPM1Q8IX07 1006 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 DCPSQ96C86 337 aaKnown RBP8.42□□□□□ -1.06
LIMA1-202ENST00000394943 AGXT2Q9BYV1 514 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 CREBZFQ9NS37 354 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 PI4KBQ9UBF8 816 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 ABCF2Q9UG63 623 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 KCNH4Q9UQ05 1017 aa8.42□□□□□ -1.06
LIMA1-202ENST00000394943 FAM155AB1AL88 458 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-202ENST00000394943 SHMT1P34896 483 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 TEX11Q8IYF3 940 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 REM2Q8IYK8 340 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-202ENST00000394943 C12orf42Q96LP6 360 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 WDR18Q9BV38 432 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 AATFQ9NY61 560 aaKnown RBP eCLIP8.41□□□□□ -1.06
LIMA1-202ENST00000394943 SLC45A1Q9Y2W3 748 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 FRAT2O75474 233 aaPredicted RBP8.41□□□□□ -1.06
LIMA1-202ENST00000394943 RASA3Q14644 834 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 SUPT20HL1Q3ZLR7 823 aa8.41□□□□□ -1.06
LIMA1-202ENST00000394943 MKL1Q969V6 931 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms