RNA–Protein interactions for RNA: ENST00000393310.5

LIMS1-203, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 4,392 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-203ENST00000393310 ATP2B3Q16720 1220 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 FAM47CQ5HY64 1035 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 PAF1Q8N7H5 531 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 TDRD7Q8NHU6 1098 aaKnown RBP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 NAA16Q6N069 864 aaPredicted RBP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 PCSK9Q8NBP7 692 aaKnown RBP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 HOXC10Q9NYD6 342 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 ZNF541Q9H0D2 1346 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 USP17L5A8MUK1 530 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 ZRANB2O95218 330 aaKnown RBP eCLIP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 CA8P35219 290 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 PPATQ06203 517 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 PPIL2Q13356 520 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 PTPROQ16827 1216 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 CCDC178Q5BJE1 867 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 RSPH3Q86UC2 560 aa9.48□□□□□ -0.89
LIMS1-203ENST00000393310 CIZ1Q9ULV3 898 aaPredicted RBP9.48□□□□□ -0.89
LIMS1-203ENST00000393310 SUPT20HL2P0C7V6 817 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 TRDNQ13061 729 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 PPIGQ13427 754 aaKnown RBP eCLIP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 SLC28A3Q9HAS3 691 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 MIS18AQ9NYP9 233 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 ATP11BQ9Y2G3 1177 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 PLCH1Q4KWH8 1693 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 EIF4E1BA6NMX2 242 aaKnown RBP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 FOSL2P15408 326 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 HABP4Q5JVS0 413 aaKnown RBP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 GPRC5AQ8NFJ5 357 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 OPTNQ96CV9 577 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 THUMPD2Q9BTF0 503 aaKnown RBP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 C11orf49Q9H6J7 331 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 TMPOP42166 694 aaKnown RBP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 PUM3Q15397 648 aaKnown RBP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 PPM1EQ8WY54 764 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 CSRNP1Q96S65 589 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 GOPCQ9HD26 462 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 CHPF2Q9P2E5 772 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 ZHX2Q9Y6X8 837 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 SLIT3O75094 1523 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 IL15P40933 162 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-203ENST00000393310 TIGD1Q96MW7 591 aa9.47□□□□□ -0.89
LIMS1-203ENST00000393310 TMEM265A0A087WTH1 108 aa9.46□□□□□ -0.89
LIMS1-203ENST00000393310 LRCH2Q5VUJ6 765 aa9.46□□□□□ -0.89
LIMS1-203ENST00000393310 USP17L2Q6R6M4 530 aa9.46□□□□□ -0.89
LIMS1-203ENST00000393310 SUGP1Q8IWZ8 645 aaKnown RBP9.46□□□□□ -0.89
LIMS1-203ENST00000393310 CLASRPQ8N2M8 674 aaKnown RBP9.46□□□□□ -0.89
LIMS1-203ENST00000393310 MTMR14Q8NCE2 650 aa9.46□□□□□ -0.89
LIMS1-203ENST00000393310 SIL1Q9H173 461 aa9.46□□□□□ -0.89
LIMS1-203ENST00000393310 KIF16BQ96L93 1317 aa9.46□□□□□ -0.89
LIMS1-203ENST00000393310 CCDC146Q8IYE0 955 aa9.46□□□□□ -0.9
LIMS1-203ENST00000393310 STK25O00506 426 aa9.46□□□□□ -0.9
LIMS1-203ENST00000393310 SPOUT1Q5T280 376 aaKnown RBP9.46□□□□□ -0.9
LIMS1-203ENST00000393310 SMIM5Q71RC9 77 aa9.46□□□□□ -0.9
LIMS1-203ENST00000393310 FOXP4Q8IVH2 680 aaPredicted RBP9.46□□□□□ -0.9
LIMS1-203ENST00000393310 SERPINA10Q9UK55 444 aa9.46□□□□□ -0.9
LIMS1-203ENST00000393310 R3HCC1Q9Y3T6 440 aaKnown RBP9.45□□□□□ -0.9
LIMS1-203ENST00000393310 STRCP1A6NGW2 1772 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 SCNN1DP51172 638 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 EIF4A1P60842 406 aaKnown RBP9.45□□□□□ -0.9
LIMS1-203ENST00000393310 TTLL7Q6ZT98 887 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 NCAPG2Q86XI2 1143 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 IFNL1Q8IU54 200 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 CCER2I3L3R5 266 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 PRRX2Q99811 253 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 HINFPQ9BQA5 517 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 ADD3Q9UEY8 706 aaKnown RBP9.45□□□□□ -0.9
LIMS1-203ENST00000393310 SRRDQ9UH36 339 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 PPLO60437 1756 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 VIL1P09327 827 aaKnown RBP9.45□□□□□ -0.9
LIMS1-203ENST00000393310 SART3Q15020 963 aaKnown RBP9.45□□□□□ -0.9
LIMS1-203ENST00000393310 EPHA10Q5JZY3 1008 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 RASAL3Q86YV0 1011 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 FRAT1Q92837 279 aaPredicted RBP9.45□□□□□ -0.9
LIMS1-203ENST00000393310 CUL5Q93034 780 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 CHMP4CQ96CF2 233 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 DEFB118Q96PH6 123 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 PTPN22Q9Y2R2 807 aa9.45□□□□□ -0.9
LIMS1-203ENST00000393310 MEGF6O75095 1541 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 CRKP46108 304 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 FKBP1AP62942 108 aaKnown RBP9.44□□□□□ -0.9
LIMS1-203ENST00000393310 GPSM2P81274 684 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 DCTN1Q14203 1278 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 RINLQ6ZS11 566 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 MB21D1Q8N884 522 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 RNPC3Q96LT9 517 aaKnown RBP9.44□□□□□ -0.9
LIMS1-203ENST00000393310 SCLT1Q96NL6 688 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 TMEM39AQ9NV64 488 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 ANKRD62A6NC57 917 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 ERC2O15083 957 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 AKAP17AQ02040 695 aaKnown RBP9.44□□□□□ -0.9
LIMS1-203ENST00000393310 GCKRQ14397 625 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 NUCKS1Q9H1E3 243 aaKnown RBP9.44□□□□□ -0.9
LIMS1-203ENST00000393310 PI4KAP2A4QPH2 592 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 FDX1P10109 184 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 CYP2B6P20813 491 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 TRIM28Q13263 835 aaKnown RBP9.44□□□□□ -0.9
LIMS1-203ENST00000393310 LMBR1LQ6UX01 489 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 PLEKHH3Q7Z736 793 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 PI4KAP1Q8N8J0 262 aa9.44□□□□□ -0.9
LIMS1-203ENST00000393310 LPIN2Q92539 896 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms