RNA–Protein interactions for RNA: ENST00000392128.6

SMARCAL1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene SMARCAL1, Length 2,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-203ENST00000392128 EYA3Q99504 573 aa13.44□□□□□ -0.26
SMARCAL1-203ENST00000392128 ARPP21Q9UBL0 812 aaPredicted RBP13.44□□□□□ -0.26
SMARCAL1-203ENST00000392128 RIMBP2O15034 1052 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 DIXDC1Q155Q3 683 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 TMEM67Q5HYA8 995 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 CDC37L1Q7L3B6 337 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 FAM184AQ8NB25 1140 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 SLC16A10Q8TF71 515 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 FAM163AQ96GL9 167 aaPredicted RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 NOL10Q9BSC4 688 aaKnown RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 RTFDC1Q9BY42 306 aaPredicted RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 SUGT1Q9Y2Z0 365 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 USP17L12C9JPN9 530 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 USP17L21D6R901 530 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 PRPF40AO75400 957 aaKnown RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 SART3Q15020 963 aaKnown RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 RRP12Q5JTH9 1297 aaKnown RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 APOA5Q6Q788 366 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 SLF2Q8IX21 1173 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 TMEM87AQ8NBN3 555 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 ESR2Q92731 530 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 DDX11Q96FC9 970 aa13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 MKRN1Q9UHC7 482 aaKnown RBP13.43□□□□□ -0.26
SMARCAL1-203ENST00000392128 IFIT3O14879 490 aaKnown RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 CHRNA5P30532 468 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 PKNOX2Q96KN3 472 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 PDGFDQ9GZP0 370 aaPredicted RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 TOMM22Q9NS69 142 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 DDX49Q9Y6V7 483 aaKnown RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 FOCADQ5VW36 1801 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 NID2Q14112 1375 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 DDX60LQ5H9U9 1706 aaKnown RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 KIF13BQ9NQT8 1826 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 GPR75-ASB3A0A0A6YYF3 556 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 DEKP35659 375 aaKnown RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 GTF2IP78347 998 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 CCDC125Q86Z20 511 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 SH3RF3Q8TEJ3 882 aaPredicted RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 GAKO14976 1311 aa13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 GOLGB1Q14789 3259 aaKnown RBP13.42□□□□□ -0.26
SMARCAL1-203ENST00000392128 CYP2D7A0A087X1C5 515 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 SLC3A2P08195 630 aaKnown RBP13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 TMTC2Q8N394 836 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 SENP2Q9HC62 589 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 SNED1Q8TER0 1413 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 MYH15Q9Y2K3 1946 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 ERICH2A1L162 156 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 ORC4O43929 436 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 PLCG2P16885 1265 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 NT5C2P49902 561 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 METAP2P50579 478 aaKnown RBP eCLIP13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 NFXL1Q6ZNB6 911 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 C7orf43Q8WVR3 580 aa13.41□□□□□ -0.26
SMARCAL1-203ENST00000392128 ZNF646O15015 1829 aaPredicted RBP13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 ROBO3Q96MS0 1386 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 CCDC69A6NI79 296 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 SMIM22K7EJ46 135 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 CPLX1O14810 134 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 ZBTB43O43298 467 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 BTDP43251 543 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 USP5P45974 858 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 RCAN1P53805 252 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 WTAPQ15007 396 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 FOXD4L6Q3SYB3 417 aaPredicted RBP13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 CC2D2BQ6DHV5 1058 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 FOXD4L3Q6VB84 417 aaPredicted RBP13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 STK11IPQ8N1F8 1099 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 SLC12A7Q9Y666 1083 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 H3BQV1 296 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 FDPSP14324 419 aaKnown RBP13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 IFFO2Q5TF58 517 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 PODNQ7Z5L7 613 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 RGS22Q8NE09 1264 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 UBAC1Q9BSL1 405 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 MCM9Q9NXL9 1143 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 CNPY2Q9Y2B0 182 aa13.4□□□□□ -0.26
SMARCAL1-203ENST00000392128 CDKL5O76039 1030 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 MBD3O95983 291 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 SEC23AQ15436 765 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 DOK7Q18PE1 504 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 C12orf60Q5U649 245 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 GZF1Q9H116 711 aaPredicted RBP13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 ECM29Q5VYK3 1845 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 G3V3G9 751 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 DNM1Q05193 864 aaKnown RBP13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 PDE4BQ07343 736 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 CSPP1Q1MSJ5 1256 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 DCAF8Q5TAQ9 597 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 SYNE3Q6ZMZ3 975 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 USP48Q86UV5 1035 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 MICU3Q86XE3 530 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 RAB11FIP4Q86YS3 637 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 GPT2Q8TD30 523 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 ZKSCAN3Q9BRR0 538 aa13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 ZSCAN16Q9H4T2 348 aaPredicted RBP13.39□□□□□ -0.27
SMARCAL1-203ENST00000392128 MYH1P12882 1939 aa13.38□□□□□ -0.27
SMARCAL1-203ENST00000392128 TNKSO95271 1327 aa13.38□□□□□ -0.27
SMARCAL1-203ENST00000392128 GOLGA8AA7E2F4 631 aa13.38□□□□□ -0.27
SMARCAL1-203ENST00000392128 USP17L8P0C7I0 530 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms