RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 SENP2Q9HC62 589 aa20.37■□□□□ 0.85
SQSTM1-202ENST00000389805 TSPYL1Q9H0U9 437 aa20.36■□□□□ 0.85
SQSTM1-202ENST00000389805 IMPACTQ9P2X3 320 aa20.36■□□□□ 0.85
SQSTM1-202ENST00000389805 SMC1AQ14683 1233 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-202ENST00000389805 UTP14AQ9BVJ6 771 aaKnown RBP20.36■□□□□ 0.85
SQSTM1-202ENST00000389805 NHSL1Q5SYE7 1610 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 TBC1D8O95759 1140 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 PDE6AP16499 860 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 INTS5Q6P9B9 1019 aaKnown RBP20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 CYB5R4Q7L1T6 521 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 TADA3O75528 432 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 ATP6V1AP38606 617 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 AKAP11Q9UKA4 1901 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 SPEF2Q9C093 1822 aa20.35■□□□□ 0.85
SQSTM1-202ENST00000389805 MYO5AQ9Y4I1 1855 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 ERVV-1B6SEH8 477 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 NRDCO43847 1150 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 ATP1A3P13637 1013 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 AIFM3Q96NN9 605 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 SLIT2O94813 1529 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 LMAN1P49257 510 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 NDUFA8P51970 172 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 EIF5P55010 431 aaKnown RBP20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 RASSF4Q9H2L5 321 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 PCDHA7Q9UN72 937 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 TRIM65Q6PJ69 517 aa20.34■□□□□ 0.85
SQSTM1-202ENST00000389805 B4E1Z4 1266 aa20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 MYO1CO00159 1063 aa20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 CPLX1O14810 134 aa20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 CRKLP46109 303 aaKnown RBP20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 FBXL16Q8N461 479 aa20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 C8orf76Q96K31 380 aa20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 LRP6O75581 1613 aa20.33■□□□□ 0.85
SQSTM1-202ENST00000389805 PUM3Q15397 648 aaKnown RBP20.33■□□□□ 0.84
SQSTM1-202ENST00000389805 STK11IPQ8N1F8 1099 aa20.33■□□□□ 0.84
SQSTM1-202ENST00000389805 CLIC4Q9Y696 253 aa20.33■□□□□ 0.84
SQSTM1-202ENST00000389805 NUP98P52948 1817 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 GPS2Q13227 327 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 RASGRF1Q13972 1273 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 CC2D1AQ6P1N0 951 aaPredicted RBP20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 LPIN2Q92539 896 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 FGFR2P21802 821 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 ITPK1Q13572 414 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 MPHOSPH8Q99549 860 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 ZSWIM4Q9H7M6 989 aa20.32■□□□□ 0.84
SQSTM1-202ENST00000389805 TCRBV5S4A2TA0A5A2 114 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 TRDNQ13061 729 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 TTF1Q15361 905 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 DDB1Q16531 1140 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 FMR1NBQ8N0W7 255 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 MAGEB6Q8N7X4 407 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 MRPS27Q92552 414 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 ZNF396Q96N95 335 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 KIAA1468Q9P260 1216 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 IQSEC3Q9UPP2 1182 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 PARP3Q9Y6F1 533 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 WTIPA6NIX2 430 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 ARID4AP29374 1257 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 BCAMP50895 628 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 UBE3CQ15386 1083 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 SF3A1Q15459 793 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 SPATA5Q8NB90 893 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 AIDAQ96BJ3 306 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 MYL10Q9BUA6 226 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 KIF28PB7ZC32 967 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 KCNQ4P56696 695 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 FBXO18Q8NFZ0 1043 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 DPF2Q92785 391 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 ZNF512BQ96KM6 892 aaPredicted RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 STRBPQ96SI9 672 aaKnown RBP20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 CCDC87Q9NVE4 849 aa20.31■□□□□ 0.84
SQSTM1-202ENST00000389805 UBE2Q2LH0YL09 131 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 FANCCQ00597 558 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 CTDSPL2Q05D32 466 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 HSP90AA4PQ58FG1 418 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 SMIM5Q71RC9 77 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 MARCH10Q8NA82 808 aaPredicted RBP20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 ARMT1Q9H993 441 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 ABCC12Q96J65 1359 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 EFCAB8A8MWE9 144 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 PRKAB2O43741 272 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 REXO1L1PQ8IX06 675 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 PHKBQ93100 1093 aa20.3■□□□□ 0.84
SQSTM1-202ENST00000389805 NEDD4P46934 1319 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 PHLPP2Q6ZVD8 1323 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 LOC102724428A0A0B4J2F2 783 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 NUTM2BA6NNL0 878 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 NUTM2EB1AL46 878 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 SIK1P57059 783 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 MUM1L1Q5H9M0 696 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 NUTM2AQ8IVF1 878 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 TACC3Q9Y6A5 838 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 KCNQ2O43526 872 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 MICU3Q86XE3 530 aa20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 EPB41L4AQ9HCS5 686 aaPredicted RBP20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 NIP7Q9Y221 180 aaKnown RBP eCLIP20.29■□□□□ 0.84
SQSTM1-202ENST00000389805 MBD4O95243 580 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 CDC27P30260 824 aa20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 IRX3P78415 501 aaPredicted RBP20.28■□□□□ 0.84
SQSTM1-202ENST00000389805 WDR24Q96S15 920 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms