RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 MAP3K14Q99558 947 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 IFIT3O14879 490 aaKnown RBP15.56■□□□□ 0.08
CCDC3-202ENST00000378839 YEATS4O95619 227 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 PTPAQ15257 358 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 STX1AQ16623 288 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 RRP12Q5JTH9 1297 aaKnown RBP15.56■□□□□ 0.08
CCDC3-202ENST00000378839 NFXL1Q6ZNB6 911 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 CCDC24Q8N4L8 307 aa15.56■□□□□ 0.08
CCDC3-202ENST00000378839 UQCRHLA0A096LP55 91 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 UQCRHP07919 91 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 LIFRP42702 1097 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 ARID5BQ14865 1188 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 SF3A1Q15459 793 aaKnown RBP15.55■□□□□ 0.08
CCDC3-202ENST00000378839 STAG1Q8WVM7 1258 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 CHMP4CQ96CF2 233 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 LRP2BPQ9P2M1 347 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 GOLGA8AA7E2F4 631 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 CTAGE5O15320 804 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 SHISA4Q96DD7 197 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 CACNA1SQ13698 1873 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 CYP2D7A0A087X1C5 515 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 KCNG4Q8TDN1 519 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 SRP68Q9UHB9 627 aaKnown RBP15.55■□□□□ 0.08
CCDC3-202ENST00000378839 MINPP1Q9UNW1 487 aa15.55■□□□□ 0.08
CCDC3-202ENST00000378839 PFKFB1P16118 471 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 CYP7A1P22680 504 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 TDO2P48775 406 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 DYNLL1P63167 89 aaKnown RBP15.54■□□□□ 0.08
CCDC3-202ENST00000378839 SLC39A14Q15043 492 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 DPCR1Q3MIW9 517 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 MFSD6Q6ZSS7 791 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 NBPF11Q86T75 865 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 ABCF2Q9UG63 623 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 HSPA1LP34931 641 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 SHC4Q6S5L8 630 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 CLIC6Q96NY7 704 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 RIOK1Q9BRS2 568 aaKnown RBP15.54■□□□□ 0.08
CCDC3-202ENST00000378839 SLC26A6Q9BXS9 759 aa15.54■□□□□ 0.08
CCDC3-202ENST00000378839 ZNF202O95125 648 aa15.53■□□□□ 0.08
CCDC3-202ENST00000378839 U2AF2P26368 475 aaKnown RBP eCLIP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 IARSP41252 1262 aaKnown RBP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 SF3B3Q15393 1217 aaKnown RBP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 CCDC82Q8N4S0 544 aa15.53■□□□□ 0.08
CCDC3-202ENST00000378839 FAM84BQ96KN1 310 aaPredicted RBP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 SLC12A7Q9Y666 1083 aa15.53■□□□□ 0.08
CCDC3-202ENST00000378839 FAM182BQ5T319 152 aa15.53■□□□□ 0.08
CCDC3-202ENST00000378839 CACTINQ8WUQ7 758 aaKnown RBP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 TSC1Q92574 1164 aa15.53■□□□□ 0.08
CCDC3-202ENST00000378839 ZHX1Q9UKY1 873 aaPredicted RBP15.53■□□□□ 0.08
CCDC3-202ENST00000378839 CLEC4GQ6UXB4 293 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 SYNE3Q6ZMZ3 975 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 AOPEPQ8N6M6 819 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 KIAA1468Q9P260 1216 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 BIN1O00499 593 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 FMNL1O95466 1100 aaPredicted RBP15.52■□□□□ 0.08
CCDC3-202ENST00000378839 TOB1P50616 345 aaPredicted RBP15.52■□□□□ 0.08
CCDC3-202ENST00000378839 PPARAQ07869 468 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 SARM1Q6SZW1 724 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 SDF4Q9BRK5 362 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 BSDC1Q9NW68 430 aaPredicted RBP15.52■□□□□ 0.08
CCDC3-202ENST00000378839 KCNJ14Q9UNX9 436 aa15.52■□□□□ 0.08
CCDC3-202ENST00000378839 CMA1P23946 247 aa15.52■□□□□ 0.07
CCDC3-202ENST00000378839 ANKRD18AQ8IVF6 992 aa15.52■□□□□ 0.07
CCDC3-202ENST00000378839 TOMM22Q9NS69 142 aa15.52■□□□□ 0.07
CCDC3-202ENST00000378839 CLIP2Q9UDT6 1046 aa15.52■□□□□ 0.07
CCDC3-202ENST00000378839 NID2Q14112 1375 aa15.52■□□□□ 0.07
CCDC3-202ENST00000378839 SMARCC1Q92922 1105 aaPredicted RBP15.51■□□□□ 0.07
CCDC3-202ENST00000378839 SPATA31A6Q5VVP1 1343 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 CCDC69A6NI79 296 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 MINDY4BA8MYZ0 360 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 BTBD18B2RXH4 712 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 GRIN1Q05586 938 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 ISM2Q6H9L7 571 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 DRC7Q8IY82 874 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 CDC5LQ99459 802 aaKnown RBP15.51■□□□□ 0.07
CCDC3-202ENST00000378839 KRT23Q9C075 422 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 RAI14Q9P0K7 980 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 HPSEQ9Y251 543 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 SCN7AQ01118 1682 aa15.51■□□□□ 0.07
CCDC3-202ENST00000378839 CDKL5O76039 1030 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 IFNAR1P17181 557 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 SEC23AQ15436 765 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 CNNM2Q9H8M5 875 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 ANO10Q9NW15 660 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 ZNF652Q9Y2D9 606 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 CAVIN2O95810 425 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 GNAT2P19087 354 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 DNTTIP2Q5QJE6 756 aaKnown RBP15.5■□□□□ 0.07
CCDC3-202ENST00000378839 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.5■□□□□ 0.07
CCDC3-202ENST00000378839 MAGEB6P1A0A0J9YX57 407 aa15.5■□□□□ 0.07
CCDC3-202ENST00000378839 SSRP1Q08945 709 aaKnown RBP15.5■□□□□ 0.07
CCDC3-202ENST00000378839 BAZ2AQ9UIF9 1905 aaKnown RBP15.49■□□□□ 0.07
CCDC3-202ENST00000378839 WTAPQ15007 396 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 SPECC1Q5M775 1068 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 TXNRD3Q86VQ6 643 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 OXER1Q8TDS5 423 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 NACAP1Q9BZK3 213 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 STK36Q9NRP7 1315 aa15.49■□□□□ 0.07
CCDC3-202ENST00000378839 GOLGA6L6A8MZA4 724 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms