RNA–Protein interactions for RNA: ENST00000378676.1

SHROOM1-202, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 2,352 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-202ENST00000378676 TOM1O60784 492 aa22.58■■□□□ 1.21
SHROOM1-202ENST00000378676 IFNKQ9P0W0 207 aa22.58■■□□□ 1.21
SHROOM1-202ENST00000378676 SYKP43405 635 aa22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 MAP3K12Q12852 859 aa22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 GNL2Q13823 731 aaKnown RBP22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 LCORLQ8N3X6 602 aa22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 CLIC6Q96NY7 704 aa22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 SLC26A6Q9BXS9 759 aa22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 IFIT3O14879 490 aaKnown RBP22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 PPP6R2O75170 966 aa22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 U2AF2P26368 475 aaKnown RBP eCLIP22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 OSBPL5Q9H0X9 879 aaPredicted RBP22.57■■□□□ 1.2
SHROOM1-202ENST00000378676 TAF1P21675 1872 aa22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 EXOC5O00471 708 aa22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 SMC2O95347 1197 aa22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 LIFRP42702 1097 aa22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 EIF5P55010 431 aaKnown RBP22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 NCBP1Q09161 790 aaKnown RBP22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 CEP135Q66GS9 1140 aa22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 NYAP1Q6ZVC0 841 aa22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 SMAP1Q8IYB5 467 aaPredicted RBP22.56■■□□□ 1.2
SHROOM1-202ENST00000378676 STK36Q9NRP7 1315 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 GUCY1A2P33402 732 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 AKNAD1Q5T1N1 836 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 INTS5Q6P9B9 1019 aaKnown RBP22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 TIGD1Q96MW7 591 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 MPHOSPH8Q99549 860 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 ZKSCAN3Q9BRR0 538 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 TUBE1Q9UJT0 475 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 SLC12A7Q9Y666 1083 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 BCAMP50895 628 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 RESP18Q5W5W9 173 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 TMC6Q7Z403 805 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 ZNF592Q92610 1267 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 AK7Q96M32 723 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 HSD3B7Q9H2F3 369 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 TRMT1Q9NXH9 659 aaKnown RBP22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 NID2Q14112 1375 aa22.55■■□□□ 1.2
SHROOM1-202ENST00000378676 CICQ96RK0 1608 aaPredicted RBP22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 MYH2Q9UKX2 1941 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 GSDMDP57764 484 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 PNOCQ13519 176 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 TRIM29Q14134 588 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 RRP12Q5JTH9 1297 aaKnown RBP22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 STK11IPQ8N1F8 1099 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 FAM237AA0A1B0GTK4 181 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 FMNL1O95466 1100 aaPredicted RBP22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 SSRP1Q08945 709 aaKnown RBP22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 PPP4R3BQ5MIZ7 849 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 CCAR2Q8N163 923 aaKnown RBP22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 PDCL2Q8N4E4 241 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 PAXBP1Q9Y5B6 917 aa22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 BAZ2AQ9UIF9 1905 aaKnown RBP22.54■■□□□ 1.2
SHROOM1-202ENST00000378676 BCL9LQ86UU0 1499 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 LMOD1P29536 600 aaPredicted RBP22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 ARMCX5Q6P1M9 558 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 JMYQ8N9B5 988 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 CCDC112Q8NEF3 446 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 IMPACTQ9P2X3 320 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 SLC4A4Q9Y6R1 1079 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 TDO2P48775 406 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 NAA30Q147X3 362 aaPredicted RBP22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 UTP14AQ9BVJ6 771 aaKnown RBP22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 CNNM2Q9H8M5 875 aa22.53■■□□□ 1.2
SHROOM1-202ENST00000378676 ATP1A3P13637 1013 aa22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 IFNAR1P17181 557 aa22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 MFSD6Q6ZSS7 791 aa22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 METTL16Q86W50 562 aaKnown RBP22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 MIGA1Q8NAN2 632 aa22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 KRT23Q9C075 422 aa22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 CCDC87Q9NVE4 849 aa22.52■■□□□ 1.2
SHROOM1-202ENST00000378676 A0A0G2JS52 829 aa22.52■■□□□ 1.19
SHROOM1-202ENST00000378676 CRKLP46109 303 aaKnown RBP22.52■■□□□ 1.19
SHROOM1-202ENST00000378676 PTPN14Q15678 1187 aa22.52■■□□□ 1.19
SHROOM1-202ENST00000378676 STAG1Q8WVM7 1258 aa22.52■■□□□ 1.19
SHROOM1-202ENST00000378676 TOMM22Q9NS69 142 aa22.52■■□□□ 1.19
SHROOM1-202ENST00000378676 PNPLA7Q6ZV29 1317 aa22.51■■□□□ 1.19
SHROOM1-202ENST00000378676 CUTAO60888 179 aa22.51■■□□□ 1.19
SHROOM1-202ENST00000378676 CAMTA2O94983 1202 aa22.51■■□□□ 1.19
SHROOM1-202ENST00000378676 PIP4K2BP78356 416 aa22.51■■□□□ 1.19
SHROOM1-202ENST00000378676 KCNJ14Q9UNX9 436 aa22.51■■□□□ 1.19
SHROOM1-202ENST00000378676 BTBD18B2RXH4 712 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 IKBKBO14920 756 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 FANCCQ00597 558 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 LONRF3Q496Y0 759 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 CACNA1SQ13698 1873 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 NTSR2O95665 410 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 TOB1P50616 345 aaPredicted RBP22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 TPM4P67936 248 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 NOSTRINQ8IVI9 506 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 CMTR1Q8N1G2 835 aaKnown RBP22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 KCND1Q9NSA2 647 aa22.5■■□□□ 1.19
SHROOM1-202ENST00000378676 MMP1P03956 469 aa22.49■■□□□ 1.19
SHROOM1-202ENST00000378676 WTAPQ15007 396 aa22.49■■□□□ 1.19
SHROOM1-202ENST00000378676 RTN1Q16799 776 aa22.49■■□□□ 1.19
SHROOM1-202ENST00000378676 SPECC1Q5M775 1068 aa22.49■■□□□ 1.19
SHROOM1-202ENST00000378676 ADGRA1Q86SQ6 560 aa22.49■■□□□ 1.19
SHROOM1-202ENST00000378676 IQSEC3Q9UPP2 1182 aaPredicted RBP22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms