RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 H3BQF6 201 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 HIP1RO75146 1068 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 GBP1P32455 592 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 SMTNP53814 917 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 ZBTB17Q13105 803 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 CCDC63Q8NA47 563 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 MTRQ99707 1265 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 LZTFL1Q9NQ48 299 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 NLRP2Q9NX02 1062 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 BTBD11A6QL63 1104 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 TRIM11Q96F44 468 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 PARP1P09874 1014 aaKnown RBP13.2□□□□□ -0.3
NPHP4-202ENST00000378161 WDR78Q5VTH9 848 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 NAA16Q6N069 864 aaPredicted RBP13.2□□□□□ -0.3
NPHP4-202ENST00000378161 CACNA2D3Q8IZS8 1091 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 FAM167BQ9BTA0 163 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 TRIM7Q9C029 511 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 ECHDC1Q9NTX5 307 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 ROR2Q01974 943 aaKnown RBP13.2□□□□□ -0.3
NPHP4-202ENST00000378161 CCDC144BQ3MJ40 725 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 CCDC144CPQ8IYA2 1237 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 IFT74Q96LB3 600 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 UBA5Q9GZZ9 404 aa13.2□□□□□ -0.3
NPHP4-202ENST00000378161 KDM5AP29375 1690 aaKnown RBP13.19□□□□□ -0.3
NPHP4-202ENST00000378161 PLA2G4DQ86XP0 818 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 IGSF22Q8N9C0 903 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 RPS6KL1Q9Y6S9 549 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 C16orf87Q6PH81 154 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 CCDC155Q8N6L0 562 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 FAM53CQ9NYF3 392 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 ZDHHC9Q9Y397 364 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 IQCB1Q15051 598 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 CFAP58Q5T655 872 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 PPP1R42Q7Z4L9 355 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 RASEFQ8IZ41 740 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 NSMCE1Q8WV22 266 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 MPHOSPH6Q99547 160 aaKnown RBP13.19□□□□□ -0.3
NPHP4-202ENST00000378161 SLC40A1Q9NP59 571 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 SPG7Q9UQ90 795 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 USH1CQ9Y6N9 552 aa13.19□□□□□ -0.3
NPHP4-202ENST00000378161 GDAP1L1Q96MZ0 367 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 ATP6V1G1O75348 118 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 ATP1A2P50993 1020 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 ATP8B2P98198 1209 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 DRP2Q13474 957 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 EXOC8Q8IYI6 725 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 TTC14Q96N46 770 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 HELLSQ9NRZ9 838 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 PIK3R4Q99570 1358 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 USP4Q13107 963 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 DIXDC1Q155Q3 683 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 ATL2Q8NHH9 583 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 RTN3O95197 1032 aaPredicted RBP13.18□□□□□ -0.3
NPHP4-202ENST00000378161 RHPN1Q8TCX5 695 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 OSBPL1AQ9BXW6 950 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 TRPC6Q9Y210 931 aa13.18□□□□□ -0.3
NPHP4-202ENST00000378161 SASH3O75995 380 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 CUL4BQ13620 913 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 TCERG1LQ5VWI1 586 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 TEKT4Q8WW24 435 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 EVI5LQ96CN4 794 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 UIMC1Q96RL1 719 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 UTP6Q9NYH9 597 aaKnown RBP13.17□□□□□ -0.3
NPHP4-202ENST00000378161 NLRP1Q9C000 1473 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 ERICH2A1L162 156 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 LMOD1P29536 600 aaPredicted RBP13.17□□□□□ -0.3
NPHP4-202ENST00000378161 GRIK3Q13003 919 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 TMED1Q13445 227 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 KBTBD12Q3ZCT8 623 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 FAM114A2Q9NRY5 505 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 ESCO1Q5FWF5 840 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 RBM12BQ8IXT5 1001 aaKnown RBP13.17□□□□□ -0.3
NPHP4-202ENST00000378161 TMOD4Q9NZQ9 345 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 PLA2R1Q13018 1463 aa13.17□□□□□ -0.3
NPHP4-202ENST00000378161 CCDC160A6NGH7 325 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 CTCFP49711 727 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 IMMTQ16891 758 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 NANOGNBQ7Z5D8 188 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 CCAR1Q8IX12 1150 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 MAF1Q9H063 256 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 PPANQ9NQ55 473 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 CDC23Q9UJX2 597 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 STXBP3O00186 592 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 FMNL1O95466 1100 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 TROVE2P10155 538 aaKnown RBP eCLIP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 SND1Q7KZF4 910 aaKnown RBP eCLIP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 CACNA2D4Q7Z3S7 1137 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 RAB11FIP4Q86YS3 637 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 RNF10Q8N5U6 811 aaKnown RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 NAPGQ99747 312 aaPredicted RBP13.16□□□□□ -0.3
NPHP4-202ENST00000378161 SCOCQ9UIL1 159 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 ZNF232Q9UNY5 417 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 PPP2R2CQ9Y2T4 447 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 IRAK1P51617 712 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 PLCB4Q15147 1175 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 AKNAD1Q5T1N1 836 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 VPS53Q5VIR6 699 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 FSIP1Q8NA03 581 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 TMEM87AQ8NBN3 555 aa13.16□□□□□ -0.3
NPHP4-202ENST00000378161 LARP6Q9BRS8 491 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms