RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 ATP2B4P23634 1241 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 CCDC175P0C221 793 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 PIM2Q9P1W9 311 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 RTL9Q8NET4 1388 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 MBD4O95243 580 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 SMC1AQ14683 1233 aaKnown RBP12.22□□□□□ -0.45
HIF3A-205ENST00000377670 USPL1Q5W0Q7 1092 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 DPP9Q86TI2 863 aa12.22□□□□□ -0.45
HIF3A-205ENST00000377670 SRRTQ9BXP5 876 aaKnown RBP12.22□□□□□ -0.45
HIF3A-205ENST00000377670 ABCC4O15439 1325 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 ATP2C2O75185 946 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 HLTFQ14527 1009 aaKnown RBP eCLIP12.21□□□□□ -0.45
HIF3A-205ENST00000377670 MAATS1Q7Z4T9 603 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 FCHSD1Q86WN1 690 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 ALG1Q9BT22 464 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 NACA2Q9H009 215 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 TET3O43151 1660 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 SYNMO15061 1565 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 USO1O60763 962 aaKnown RBP12.21□□□□□ -0.45
HIF3A-205ENST00000377670 RPS8P62241 208 aaKnown RBP12.21□□□□□ -0.45
HIF3A-205ENST00000377670 FAM173BQ6P4H8 233 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 PRDM1O75626 825 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 DNM2P50570 870 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 UBE4AQ14139 1066 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 KMT5BQ4FZB7 885 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 USP40Q9NVE5 1235 aa12.21□□□□□ -0.45
HIF3A-205ENST00000377670 PPEF1O14829 653 aaPredicted RBP12.21□□□□□ -0.46
HIF3A-205ENST00000377670 SPECC1Q5M775 1068 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 TRMT2AQ8IZ69 625 aaKnown RBP12.21□□□□□ -0.46
HIF3A-205ENST00000377670 TTC12Q9H892 705 aaPredicted RBP12.21□□□□□ -0.46
HIF3A-205ENST00000377670 ARMT1Q9H993 441 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 SHROOM2Q13796 1616 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 IQGAP3Q86VI3 1631 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 LOC102724428A0A0B4J2F2 783 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 FAM13AO94988 1023 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 SIK1P57059 783 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 CCDC186Q7Z3E2 898 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 HOOK3Q86VS8 718 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 NCOA5Q9HCD5 579 aaKnown RBP12.21□□□□□ -0.46
HIF3A-205ENST00000377670 AXIN2Q9Y2T1 843 aa12.21□□□□□ -0.46
HIF3A-205ENST00000377670 ZNF521Q96K83 1311 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 GOLGA6L9A6NEM1 432 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 GCOM1H8Y6P7 765 aaPredicted RBP12.2□□□□□ -0.46
HIF3A-205ENST00000377670 GRIN3BO60391 1043 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 MYZAPP0CAP1 466 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 MTIF2P46199 727 aaKnown RBP12.2□□□□□ -0.46
HIF3A-205ENST00000377670 RTL1A6NKG5 1358 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 IGSF1Q8N6C5 1336 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 DKC1O60832 514 aaKnown RBP eCLIP12.2□□□□□ -0.46
HIF3A-205ENST00000377670 MKRN3Q13064 507 aaKnown RBP12.2□□□□□ -0.46
HIF3A-205ENST00000377670 HOXB7P09629 217 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 SEC62Q99442 399 aaKnown RBP12.2□□□□□ -0.46
HIF3A-205ENST00000377670 A2ML1A8K2U0 1454 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 NCAPG2Q86XI2 1143 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 KIAA0825Q8IV33 1275 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 FAM200AQ8TCP9 573 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 RNF216Q9NWF9 866 aaPredicted RBP12.2□□□□□ -0.46
HIF3A-205ENST00000377670 RNF181Q9P0P0 153 aa12.2□□□□□ -0.46
HIF3A-205ENST00000377670 SERPINB2P05120 415 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 SKILP12757 684 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 GNA11P29992 359 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 LRRC24Q50LG9 513 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 ZEB2O60315 1214 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 IVLP07476 585 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 ZAP70P43403 619 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 ANO6Q4KMQ2 910 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 TDRD12Q587J7 1177 aaKnown RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 BEND3Q5T5X7 828 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 SLC10A4Q96EP9 437 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 TMEM106CQ9BVX2 250 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 B4E1Z4 1266 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 FMNL1O95466 1100 aaPredicted RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 MFSD14BQ5SR56 506 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 EAF2Q96CJ1 260 aaPredicted RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 EXOC1Q9NV70 894 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 SLC8A3P57103 927 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 MCM6Q14566 821 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 RUFY3Q7L099 469 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 TTLL6Q8N841 843 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 FAM193BQ96PV7 902 aaPredicted RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 NAP1L4Q99733 375 aaKnown RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 BABAM1Q9NWV8 329 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 DNAI1Q9UI46 699 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 GSTTP1A0A1W2PQM5 241 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 ACTN2P35609 894 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 IREB2P48200 963 aaKnown RBP12.19□□□□□ -0.46
HIF3A-205ENST00000377670 ZBTB9Q96C00 473 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 ARFGAP3Q9NP61 516 aa12.19□□□□□ -0.46
HIF3A-205ENST00000377670 HARSP12081 509 aaKnown RBP12.18□□□□□ -0.46
HIF3A-205ENST00000377670 RNF169Q8NCN4 708 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 ALS2CR12Q96Q35 445 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 JADE2Q9NQC1 790 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 FNBP4Q8N3X1 1017 aaPredicted RBP12.18□□□□□ -0.46
HIF3A-205ENST00000377670 SNX14Q9Y5W7 946 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 SLC1A4P43007 532 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 SNX21Q969T3 373 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 MYL10Q9BUA6 226 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 CALML3P27482 149 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms