RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 CAPN15O75808 1086 aa20.55■□□□□ 0.88
HMGN4-201ENST00000377575 ZAP70P43403 619 aa20.55■□□□□ 0.88
HMGN4-201ENST00000377575 RHBDL3P58872 404 aa20.55■□□□□ 0.88
HMGN4-201ENST00000377575 PICALMQ13492 652 aa20.55■□□□□ 0.88
HMGN4-201ENST00000377575 ZSCAN29Q8IWY8 852 aaPredicted RBP20.55■□□□□ 0.88
HMGN4-201ENST00000377575 OTUD5Q96G74 571 aa20.55■□□□□ 0.88
HMGN4-201ENST00000377575 SNCAIPQ9Y6H5 919 aa20.55■□□□□ 0.88
HMGN4-201ENST00000377575 COL2A1P02458 1487 aaPredicted RBP20.55■□□□□ 0.88
HMGN4-201ENST00000377575 DOCK1Q14185 1865 aa20.54■□□□□ 0.88
HMGN4-201ENST00000377575 SPDYE5A6NIY4 337 aa20.54■□□□□ 0.88
HMGN4-201ENST00000377575 NPM3O75607 178 aaKnown RBP20.54■□□□□ 0.88
HMGN4-201ENST00000377575 TBC1D8O95759 1140 aa20.54■□□□□ 0.88
HMGN4-201ENST00000377575 GTF2A2P52657 109 aa20.54■□□□□ 0.88
HMGN4-201ENST00000377575 NOM1Q5C9Z4 860 aaKnown RBP20.54■□□□□ 0.88
HMGN4-201ENST00000377575 ERO1BQ86YB8 467 aa20.54■□□□□ 0.88
HMGN4-201ENST00000377575 ZKSCAN4Q969J2 545 aaPredicted RBP20.54■□□□□ 0.88
HMGN4-201ENST00000377575 BAG3O95817 575 aa20.53■□□□□ 0.88
HMGN4-201ENST00000377575 IFIT2P09913 472 aaKnown RBP20.53■□□□□ 0.88
HMGN4-201ENST00000377575 PLCG2P16885 1265 aa20.53■□□□□ 0.88
HMGN4-201ENST00000377575 ZFPM1Q8IX07 1006 aa20.53■□□□□ 0.88
HMGN4-201ENST00000377575 CNKSR2Q8WXI2 1034 aa20.53■□□□□ 0.88
HMGN4-201ENST00000377575 DDX4Q9NQI0 724 aaKnown RBP20.53■□□□□ 0.88
HMGN4-201ENST00000377575 ATRNL1Q5VV63 1379 aa20.53■□□□□ 0.88
HMGN4-201ENST00000377575 TESPA1A2RU30 521 aaPredicted RBP20.52■□□□□ 0.88
HMGN4-201ENST00000377575 IGF2BP3O00425 579 aaKnown RBP eCLIP20.52■□□□□ 0.88
HMGN4-201ENST00000377575 DGKZQ13574 1117 aa20.52■□□□□ 0.88
HMGN4-201ENST00000377575 TEX11Q8IYF3 940 aa20.52■□□□□ 0.88
HMGN4-201ENST00000377575 ABHD8Q96I13 439 aa20.52■□□□□ 0.88
HMGN4-201ENST00000377575 PIH1D3Q9NQM4 214 aaKnown RBP20.52■□□□□ 0.88
HMGN4-201ENST00000377575 ZNF112Q9UJU3 913 aa20.52■□□□□ 0.88
HMGN4-201ENST00000377575 GPR25O00155 361 aa20.51■□□□□ 0.87
HMGN4-201ENST00000377575 IDH1O75874 414 aaKnown RBP20.51■□□□□ 0.87
HMGN4-201ENST00000377575 INPP5BP32019 993 aa20.51■□□□□ 0.87
HMGN4-201ENST00000377575 RRP1P56182 461 aaKnown RBP20.51■□□□□ 0.87
HMGN4-201ENST00000377575 PPIL2Q13356 520 aa20.51■□□□□ 0.87
HMGN4-201ENST00000377575 NOL9Q5SY16 702 aaKnown RBP20.51■□□□□ 0.87
HMGN4-201ENST00000377575 TMED8Q6PL24 325 aaPredicted RBP20.51■□□□□ 0.87
HMGN4-201ENST00000377575 MS4A4AQ96JQ5 239 aa20.51■□□□□ 0.87
HMGN4-201ENST00000377575 MCOLN1Q9GZU1 580 aa20.51■□□□□ 0.87
HMGN4-201ENST00000377575 AATFQ9NY61 560 aaKnown RBP eCLIP20.51■□□□□ 0.87
HMGN4-201ENST00000377575 ATAD5Q96QE3 1844 aa20.5■□□□□ 0.87
HMGN4-201ENST00000377575 CCL15-CCL14A0A0B4J2E2 113 aa20.5■□□□□ 0.87
HMGN4-201ENST00000377575 DDTLA6NHG4 134 aaPredicted RBP20.5■□□□□ 0.87
HMGN4-201ENST00000377575 PPATQ06203 517 aa20.5■□□□□ 0.87
HMGN4-201ENST00000377575 CCL15Q16663 113 aa20.5■□□□□ 0.87
HMGN4-201ENST00000377575 SH3BP5LQ7L8J4 393 aa20.5■□□□□ 0.87
HMGN4-201ENST00000377575 ZNF296Q8WUU4 475 aaPredicted RBP20.5■□□□□ 0.87
HMGN4-201ENST00000377575 OSBPL5Q9H0X9 879 aaPredicted RBP20.5■□□□□ 0.87
HMGN4-201ENST00000377575 CETPP11597 493 aa20.49■□□□□ 0.87
HMGN4-201ENST00000377575 MAP3K12Q12852 859 aa20.49■□□□□ 0.87
HMGN4-201ENST00000377575 SNAPC2Q13487 334 aa20.49■□□□□ 0.87
HMGN4-201ENST00000377575 TTF1Q15361 905 aaPredicted RBP20.49■□□□□ 0.87
HMGN4-201ENST00000377575 CTU1Q7Z7A3 348 aaKnown RBP20.49■□□□□ 0.87
HMGN4-201ENST00000377575 CERS3Q8IU89 383 aa20.49■□□□□ 0.87
HMGN4-201ENST00000377575 SH3RF3Q8TEJ3 882 aaPredicted RBP20.49■□□□□ 0.87
HMGN4-201ENST00000377575 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.49■□□□□ 0.87
HMGN4-201ENST00000377575 LRRCC1Q9C099 1032 aa20.49■□□□□ 0.87
HMGN4-201ENST00000377575 BCL11AQ9H165 835 aa20.49■□□□□ 0.87
HMGN4-201ENST00000377575 PPP4CP60510 307 aa20.48■□□□□ 0.87
HMGN4-201ENST00000377575 BRI3BPQ8WY22 251 aa20.48■□□□□ 0.87
HMGN4-201ENST00000377575 PTPN18Q99952 460 aa20.48■□□□□ 0.87
HMGN4-201ENST00000377575 NDUFB9Q9Y6M9 179 aa20.48■□□□□ 0.87
HMGN4-201ENST00000377575 MYH7P12883 1935 aa20.48■□□□□ 0.87
HMGN4-201ENST00000377575 MYH1P12882 1939 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 IRF6O14896 467 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 FKTNO75072 461 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 CYP7A1P22680 504 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 MAP3K10Q02779 954 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 ADGRA1Q86SQ6 560 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 SCYL3Q8IZE3 742 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 MAGEB6Q8N7X4 407 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 PICK1Q9NRD5 415 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 SIPA1L1O43166 1804 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 PHIPQ8WWQ0 1821 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 PTPRFP10586 1907 aa20.47■□□□□ 0.87
HMGN4-201ENST00000377575 PHF20L1A8MW92 1017 aa20.46■□□□□ 0.87
HMGN4-201ENST00000377575 TBC1D12O60347 775 aa20.46■□□□□ 0.87
HMGN4-201ENST00000377575 CRHR2Q13324 411 aa20.46■□□□□ 0.87
HMGN4-201ENST00000377575 DHX36Q9H2U1 1008 aaKnown RBP20.46■□□□□ 0.87
HMGN4-201ENST00000377575 R3HDMLQ9H3Y0 253 aa20.46■□□□□ 0.87
HMGN4-201ENST00000377575 ANTXR1Q9H6X2 564 aa20.46■□□□□ 0.87
HMGN4-201ENST00000377575 NAV1Q8NEY1 1877 aa20.45■□□□□ 0.86
HMGN4-201ENST00000377575 DNAJC2Q99543 621 aaKnown RBP20.45■□□□□ 0.86
HMGN4-201ENST00000377575 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.45■□□□□ 0.86
HMGN4-201ENST00000377575 ZCCHC17Q9NP64 241 aaKnown RBP20.45■□□□□ 0.86
HMGN4-201ENST00000377575 FLT1P17948 1338 aa20.45■□□□□ 0.86
HMGN4-201ENST00000377575 CTNND1O60716 968 aaKnown RBP20.44■□□□□ 0.86
HMGN4-201ENST00000377575 TAF1CQ15572 869 aaPredicted RBP20.44■□□□□ 0.86
HMGN4-201ENST00000377575 PKN2Q16513 984 aaKnown RBP20.44■□□□□ 0.86
HMGN4-201ENST00000377575 TGFBRAP1Q8WUH2 860 aa20.44■□□□□ 0.86
HMGN4-201ENST00000377575 ZFYVE28Q9HCC9 887 aa20.44■□□□□ 0.86
HMGN4-201ENST00000377575 HERC5Q9UII4 1024 aaKnown RBP20.44■□□□□ 0.86
HMGN4-201ENST00000377575 KCNH4Q9UQ05 1017 aa20.44■□□□□ 0.86
HMGN4-201ENST00000377575 GOLIM4O00461 696 aa20.43■□□□□ 0.86
HMGN4-201ENST00000377575 MAPKAPK5Q8IW41 473 aa20.43■□□□□ 0.86
HMGN4-201ENST00000377575 FAM43AQ8N2R8 423 aa20.43■□□□□ 0.86
HMGN4-201ENST00000377575 PI4KBQ9UBF8 816 aa20.43■□□□□ 0.86
HMGN4-201ENST00000377575 DDX60LQ5H9U9 1706 aaKnown RBP20.42■□□□□ 0.86
HMGN4-201ENST00000377575 PTPRAP18433 802 aa20.42■□□□□ 0.86
HMGN4-201ENST00000377575 ATP5JP18859 108 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms