RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 TPM3P06753 285 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 SF3B3Q15393 1217 aaKnown RBP11.18□□□□□ -0.62
TRIM39-202ENST00000376659 AMIGO3Q86WK7 504 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 STK11IPQ8N1F8 1099 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 KCNG4Q8TDN1 519 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 CNNM1Q9NRU3 951 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 CMA1P23946 247 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 FOSBP53539 338 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 DPCR1Q3MIW9 517 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 ANO1Q5XXA6 986 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 HELBQ8NG08 1087 aaPredicted RBP11.18□□□□□ -0.62
TRIM39-202ENST00000376659 BICD2Q8TD16 824 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 TIGD1Q96MW7 591 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 ORC3Q9UBD5 711 aaPredicted RBP11.18□□□□□ -0.62
TRIM39-202ENST00000376659 SLC5A1P13866 664 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 PFKFB1P16118 471 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 BMP6P22004 513 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 BCAMP50895 628 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 CTDSPL2Q05D32 466 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 NYAP1Q6ZVC0 841 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 VPS37DQ86XT2 251 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 RAB11FIP4Q86YS3 637 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 FSIP1Q8NA03 581 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 C8orf76Q96K31 380 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 UTP14AQ9BVJ6 771 aaKnown RBP11.18□□□□□ -0.62
TRIM39-202ENST00000376659 KIAA1468Q9P260 1216 aa11.18□□□□□ -0.62
TRIM39-202ENST00000376659 A0A1B0GVL5 298 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 MBD4O95243 580 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 CEBPZQ03701 1054 aaKnown RBP11.17□□□□□ -0.62
TRIM39-202ENST00000376659 CHRNDQ07001 517 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 SLC10A5Q5PT55 438 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 NT5DC1Q5TFE4 455 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 MAGEB6Q8N7X4 407 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 TNFRSF25Q93038 417 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.17□□□□□ -0.62
TRIM39-202ENST00000376659 ARMT1Q9H993 441 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 IFNAR1P17181 557 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 ARID5BQ14865 1188 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 TPRNQ4KMQ1 711 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 KRT40Q6A162 431 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 ERCC4Q92889 916 aaPredicted RBP11.17□□□□□ -0.62
TRIM39-202ENST00000376659 OSBPL5Q9H0X9 879 aaPredicted RBP11.17□□□□□ -0.62
TRIM39-202ENST00000376659 ARFGEF1Q9Y6D6 1849 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 AKNAD1Q5T1N1 836 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 METTL16Q86W50 562 aaKnown RBP11.17□□□□□ -0.62
TRIM39-202ENST00000376659 LRRC8AQ8IWT6 810 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 ANKRD7Q92527 254 aa11.17□□□□□ -0.62
TRIM39-202ENST00000376659 SPTLC2O15270 562 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 EVX2Q03828 476 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 PKN1Q16512 942 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 FOXP4Q8IVH2 680 aaPredicted RBP11.16□□□□□ -0.62
TRIM39-202ENST00000376659 SPATA20Q8TB22 786 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 PHKBQ93100 1093 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 KIF3AQ9Y496 699 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 MYH8P13535 1937 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 ROBO3Q96MS0 1386 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 KCNQ2O43526 872 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 METAP2P50579 478 aaKnown RBP eCLIP11.16□□□□□ -0.62
TRIM39-202ENST00000376659 CLEC4GQ6UXB4 293 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 PTF1AQ7RTS3 328 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 CCDC186Q7Z3E2 898 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 CHMP4CQ96CF2 233 aa11.16□□□□□ -0.62
TRIM39-202ENST00000376659 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.16□□□□□ -0.62
TRIM39-202ENST00000376659 MMP1P03956 469 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 TM4SF1P30408 202 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 SPC24Q8NBT2 197 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 MED15Q96RN5 788 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 ZNF330Q9Y3S2 320 aaPredicted RBP11.15□□□□□ -0.62
TRIM39-202ENST00000376659 KAT6BQ8WYB5 2073 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 DHX16O60231 1041 aaKnown RBP11.15□□□□□ -0.62
TRIM39-202ENST00000376659 RXRAP19793 462 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 FBXO2Q9UK22 296 aaPredicted RBP11.15□□□□□ -0.62
TRIM39-202ENST00000376659 USP27XA6NNY8 438 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 IDH1O75874 414 aaKnown RBP11.15□□□□□ -0.62
TRIM39-202ENST00000376659 ZNF202O95125 648 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 KLRK1P26718 216 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 SARSP49591 514 aaKnown RBP11.15□□□□□ -0.62
TRIM39-202ENST00000376659 ERFEQ4G0M1 354 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 GORABQ5T7V8 394 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 MYL10Q9BUA6 226 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 INTS13Q9NVM9 706 aa11.15□□□□□ -0.62
TRIM39-202ENST00000376659 POLR3DP05423 398 aaPredicted RBP11.14□□□□□ -0.63
TRIM39-202ENST00000376659 ATP6V1AP38606 617 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 NLRP12P59046 1061 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 GRIN1Q05586 938 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 SF3A1Q15459 793 aaKnown RBP11.14□□□□□ -0.63
TRIM39-202ENST00000376659 SLC51AQ86UW1 340 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 ALG1Q9BT22 464 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 BSDC1Q9NW68 430 aaPredicted RBP11.14□□□□□ -0.63
TRIM39-202ENST00000376659 MKRN1Q9UHC7 482 aaKnown RBP11.14□□□□□ -0.63
TRIM39-202ENST00000376659 DDB1Q16531 1140 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 CCDC152Q4G0S7 254 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 FBXO33Q7Z6M2 555 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 TMX1Q9H3N1 280 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 WNT7AO00755 349 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 GNAT2P19087 354 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 PDCL3Q9H2J4 239 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 CLIP2Q9UDT6 1046 aa11.14□□□□□ -0.63
TRIM39-202ENST00000376659 IKBKBO14920 756 aa11.13□□□□□ -0.63
TRIM39-202ENST00000376659 FANCGO15287 622 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms