RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 GPBAR1Q8TDU6 330 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 ZFYVE1Q9HBF4 777 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 PPP4R2Q9NY27 417 aa4.23□□□□□ -1.73
VPS13A-206ENST00000376646 ZC3H7BQ9UGR2 993 aaKnown RBP4.23□□□□□ -1.73
VPS13A-206ENST00000376646 WNT11O96014 354 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 ARNTP27540 789 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 KIF4BQ2VIQ3 1234 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 ZSCAN29Q8IWY8 852 aaPredicted RBP4.22□□□□□ -1.73
VPS13A-206ENST00000376646 FAM181AQ8N9Y4 354 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 GIMAP7Q8NHV1 300 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 NECAB3Q96P71 396 aaPredicted RBP4.22□□□□□ -1.73
VPS13A-206ENST00000376646 PIDD1Q9HB75 910 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 HMCN1Q96RW7 5635 aa4.22□□□□□ -1.73
VPS13A-206ENST00000376646 LEFTY1O75610 366 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 CELA3AP09093 270 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 SLFN14P0C7P3 912 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 UBE3DQ7Z6J8 389 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 AEBP1Q8IUX7 1158 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 ABI1Q8IZP0 508 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 TRAIPQ9BWF2 469 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 CCDC39Q9UFE4 941 aa4.21□□□□□ -1.73
VPS13A-206ENST00000376646 FAM87AP0C7U9 286 aa4.21□□□□□ -1.74
VPS13A-206ENST00000376646 XRCC5P13010 732 aaKnown RBP4.21□□□□□ -1.74
VPS13A-206ENST00000376646 BMP6P22004 513 aa4.21□□□□□ -1.74
VPS13A-206ENST00000376646 NME2P22392 152 aa4.21□□□□□ -1.74
VPS13A-206ENST00000376646 ZNF252P-AS1Q0IIN9 211 aa4.21□□□□□ -1.74
VPS13A-206ENST00000376646 SMYD4Q8IYR2 804 aaPredicted RBP4.21□□□□□ -1.74
VPS13A-206ENST00000376646 ACSBG1Q96GR2 724 aa4.21□□□□□ -1.74
VPS13A-206ENST00000376646 METTL22Q9BUU2 404 aaPredicted RBP4.21□□□□□ -1.74
VPS13A-206ENST00000376646 DCDC2CA8MYV0 355 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 LDHBP07195 334 aaKnown RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 USP17L7P0C7H9 530 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 TAL1P17542 331 aaPredicted RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 GSTT1P30711 240 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 IRAK1P51617 712 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 ZC3H12AQ5D1E8 599 aaKnown RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 PPM1JQ5JR12 505 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 DUSP27Q5VZP5 1158 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 ISL2Q96A47 359 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 ATXN3LQ9H3M9 355 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 KRT82Q9NSB4 513 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 ANGEL1Q9UNK9 670 aaKnown RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 RNF114Q9Y508 228 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 PTPN11Q06124 597 aaPredicted RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 COL19A1Q14993 1142 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 OGFOD3Q6PK18 319 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 ZNF574Q6ZN55 896 aaPredicted RBP4.2□□□□□ -1.74
VPS13A-206ENST00000376646 C12orf40Q86WS4 652 aa4.2□□□□□ -1.74
VPS13A-206ENST00000376646 CD96P40200 585 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 ALG1LQ6GMV1 187 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 PLD6Q8N2A8 252 aaKnown RBP4.19□□□□□ -1.74
VPS13A-206ENST00000376646 FBF1Q8TES7 1133 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 C12orf49Q9H741 205 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 SSU72Q9NP77 194 aaKnown RBP4.19□□□□□ -1.74
VPS13A-206ENST00000376646 SYNGAP1Q96PV0 1343 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 NTF4P34130 210 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 CDK8P49336 464 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 ATP2B2Q01814 1243 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 TP53INP2Q8IXH6 220 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 ADGRE2Q9UHX3 823 aa4.19□□□□□ -1.74
VPS13A-206ENST00000376646 BNIP3Q12983 259 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 CPSF6Q16630 551 aaKnown RBP eCLIP4.18□□□□□ -1.74
VPS13A-206ENST00000376646 PCNX4Q63HM2 1172 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 PDZRN4Q6ZMN7 1036 aaPredicted RBP4.18□□□□□ -1.74
VPS13A-206ENST00000376646 SPRED2Q7Z698 418 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 PHF6Q8IWS0 365 aaKnown RBP eCLIP4.18□□□□□ -1.74
VPS13A-206ENST00000376646 TOP6BLQ8N6T0 577 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 FLCNQ8NFG4 579 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 BSDC1Q9NW68 430 aaPredicted RBP4.18□□□□□ -1.74
VPS13A-206ENST00000376646 SPG7Q9UQ90 795 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 ANKRD33BA6NCL7 494 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 PRNPP04156 253 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 CYP27A1Q02318 531 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 INPP5AQ14642 412 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 LLGL2Q6P1M3 1020 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 WFDC3Q8IUB2 231 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 DUSP23Q9BVJ7 150 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 PAK6Q9NQU5 681 aaPredicted RBP4.18□□□□□ -1.74
VPS13A-206ENST00000376646 CACNA2D2Q9NY47 1150 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 PCDHA4Q9UN74 947 aa4.18□□□□□ -1.74
VPS13A-206ENST00000376646 TTF2Q9UNY4 1162 aaKnown RBP4.18□□□□□ -1.74
VPS13A-206ENST00000376646 ERVK-24P63145 666 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 VSIG10LQ86VR7 867 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 RNF214Q8ND24 703 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 FAM161BQ96MY7 647 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 DUSP9Q99956 384 aaKnown RBP4.17□□□□□ -1.74
VPS13A-206ENST00000376646 EMILIN2Q9BXX0 1053 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 CEP44Q9C0F1 390 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 SRCIN1Q9C0H9 1055 aa4.17□□□□□ -1.74
VPS13A-206ENST00000376646 ITIH2P19823 946 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 MAP3K11Q16584 847 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 LRFN4Q6PJG9 635 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 BCL7CQ8WUZ0 217 aaPredicted RBP4.16□□□□□ -1.74
VPS13A-206ENST00000376646 PICK1Q9NRD5 415 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 FAM8A1Q9UBU6 413 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 PCOLCE2Q9UKZ9 415 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 PPM1HQ9ULR3 514 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 PRAMEF27A3QJZ7 478 aa4.16□□□□□ -1.74
VPS13A-206ENST00000376646 CYP27C1Q4G0S4 372 aa4.16□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms