RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 CLRN2A0PK11 232 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 KIF3CO14782 793 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 ZKSCAN1P17029 563 aaPredicted RBP16.85■□□□□ 0.29
HMGA1-203ENST00000374116 MSNP26038 577 aaKnown RBP16.85■□□□□ 0.29
HMGA1-203ENST00000374116 CACNB3P54284 484 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 AK2P54819 239 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 TTF1Q15361 905 aaPredicted RBP16.85■□□□□ 0.29
HMGA1-203ENST00000374116 DLGAP5Q15398 846 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 UTP14CQ5TAP6 766 aaKnown RBP16.85■□□□□ 0.29
HMGA1-203ENST00000374116 KBTBD3Q8NAB2 608 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 TEKT1Q969V4 418 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 CLEC11AQ9Y240 323 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 DAGLAQ9Y4D2 1042 aa16.85■□□□□ 0.29
HMGA1-203ENST00000374116 RBM8AQ9Y5S9 174 aaKnown RBP16.85■□□□□ 0.29
HMGA1-203ENST00000374116 ZBTB22O15209 634 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 CASTP20810 708 aaKnown RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 NASPP49321 788 aaPredicted RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 VPS53Q5VIR6 699 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 NAA16Q6N069 864 aaPredicted RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 ZNF589Q86UQ0 364 aaPredicted RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 MIGA1Q8NAN2 632 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 ANP32BQ92688 251 aaKnown RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 TDRD3Q9H7E2 651 aaKnown RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 ZSWIM6Q9HCJ5 1215 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 POLR2AP24928 1970 aaKnown RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 DYNC1I1O14576 645 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 PDE6AP16499 860 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 CYP7A1P22680 504 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 RBM10P98175 930 aaKnown RBP16.84■□□□□ 0.29
HMGA1-203ENST00000374116 MAP3K12Q12852 859 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 SERPINA10Q9UK55 444 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 SUGT1Q9Y2Z0 365 aa16.84■□□□□ 0.29
HMGA1-203ENST00000374116 ZNF532Q9HCE3 1301 aa16.83■□□□□ 0.29
HMGA1-203ENST00000374116 SPDYE2BA6NHP3 402 aa16.83■□□□□ 0.28
HMGA1-203ENST00000374116 PRPF40AO75400 957 aaKnown RBP16.83■□□□□ 0.28
HMGA1-203ENST00000374116 SPDYE6P0CI01 402 aa16.83■□□□□ 0.28
HMGA1-203ENST00000374116 MCM5P33992 734 aa16.83■□□□□ 0.28
HMGA1-203ENST00000374116 TSGA10IPQ3SY00 556 aa16.83■□□□□ 0.28
HMGA1-203ENST00000374116 CREB3L3Q68CJ9 461 aa16.83■□□□□ 0.28
HMGA1-203ENST00000374116 APOBEC3HQ6NTF7 200 aaKnown RBP16.83■□□□□ 0.28
HMGA1-203ENST00000374116 AATFQ9NY61 560 aaKnown RBP eCLIP16.83■□□□□ 0.28
HMGA1-203ENST00000374116 NOL7Q9UMY1 257 aaKnown RBP16.83■□□□□ 0.28
HMGA1-203ENST00000374116 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.83■□□□□ 0.28
HMGA1-203ENST00000374116 CYP46A1Q9Y6A2 500 aa16.83■□□□□ 0.28
HMGA1-203ENST00000374116 WDR33Q9C0J8 1336 aaKnown RBP16.83■□□□□ 0.28
HMGA1-203ENST00000374116 RPAP1Q9BWH6 1393 aaPredicted RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 ZNF445P59923 1031 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 DYNLL1P63167 89 aaKnown RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 ADCK5Q3MIX3 580 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 ANGEL2Q5VTE6 544 aaKnown RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 MAP1SQ66K74 1059 aaPredicted RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 RUFY3Q7L099 469 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 ZSCAN31Q96LW9 406 aaPredicted RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 JAKMIP1Q96N16 626 aaKnown RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 PDRG1Q9NUG6 133 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 GGA3Q9NZ52 723 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 MROH7-TTC4A0A0A0MT08 1334 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 MAST3O60307 1309 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 SLC27A2O14975 620 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 BTDP43251 543 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 RNF20Q5VTR2 975 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 ZBED3Q96IU2 234 aaPredicted RBP16.82■□□□□ 0.28
HMGA1-203ENST00000374116 PDLIM2Q96JY6 352 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 ZDHHC15Q96MV8 337 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 VEZTQ9HBM0 779 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 MYH7P12883 1935 aa16.82■□□□□ 0.28
HMGA1-203ENST00000374116 TCRBV5S4A2TA0A5A2 114 aa16.81■□□□□ 0.28
HMGA1-203ENST00000374116 PSMA5P28066 241 aa16.81■□□□□ 0.28
HMGA1-203ENST00000374116 FMR1Q06787 632 aaKnown RBP eCLIP16.81■□□□□ 0.28
HMGA1-203ENST00000374116 CSPP1Q1MSJ5 1256 aa16.81■□□□□ 0.28
HMGA1-203ENST00000374116 PRAMEF18Q5VWM3 479 aa16.81■□□□□ 0.28
HMGA1-203ENST00000374116 HHIPL2Q6UWX4 724 aa16.81■□□□□ 0.28
HMGA1-203ENST00000374116 USP50Q70EL3 339 aaPredicted RBP16.81■□□□□ 0.28
HMGA1-203ENST00000374116 SEC62Q99442 399 aaKnown RBP16.81■□□□□ 0.28
HMGA1-203ENST00000374116 SH2B1Q9NRF2 756 aaPredicted RBP16.81■□□□□ 0.28
HMGA1-203ENST00000374116 ADD2P35612 726 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 C1QTNF8P60827 252 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 CDC42EP5Q6NZY7 148 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 PNMA8AQ86V59 439 aaPredicted RBP16.8■□□□□ 0.28
HMGA1-203ENST00000374116 MAST2Q6P0Q8 1798 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 TCP10L2B9ZVM9 353 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 NCLP19338 710 aaKnown RBP16.8■□□□□ 0.28
HMGA1-203ENST00000374116 HDLBPQ00341 1268 aaKnown RBP16.8■□□□□ 0.28
HMGA1-203ENST00000374116 MCMDC2Q4G0Z9 681 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.8■□□□□ 0.283e-7■□□□□ 8.6
HMGA1-203ENST00000374116 PUS7LQ9H0K6 701 aaKnown RBP16.8■□□□□ 0.28
HMGA1-203ENST00000374116 USP40Q9NVE5 1235 aa16.8■□□□□ 0.28
HMGA1-203ENST00000374116 GAKO14976 1311 aa16.79■□□□□ 0.28
HMGA1-203ENST00000374116 MBD3O95983 291 aa16.79■□□□□ 0.28
HMGA1-203ENST00000374116 GSTO1P78417 241 aa16.79■□□□□ 0.28
HMGA1-203ENST00000374116 FOXD4L5Q5VV16 416 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-203ENST00000374116 CAVIN1Q6NZI2 390 aaKnown RBP16.79■□□□□ 0.28
HMGA1-203ENST00000374116 MTMR14Q8NCE2 650 aa16.79■□□□□ 0.28
HMGA1-203ENST00000374116 SH3RF3Q8TEJ3 882 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-203ENST00000374116 FOXD4L4Q8WXT5 416 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-203ENST00000374116 ZNF70Q9UC06 446 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-203ENST00000374116 GPR75-ASB3A0A0A6YYF3 556 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 ADM5C9JUS6 153 aa16.78■□□□□ 0.28
HMGA1-203ENST00000374116 RNF113AO15541 343 aaKnown RBP16.78■□□□□ 0.28
HMGA1-203ENST00000374116 CPA1P15085 419 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms