RNA–Protein interactions for RNA: ENST00000367257.8

SYNE1-209, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 5,022 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-209ENST00000367257 CCDC38Q502W7 563 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 CNNM4Q6P4Q7 775 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 NME9Q86XW9 330 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 IFT20Q8IY31 132 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 SYCE1Q8N0S2 351 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 BICD1Q96G01 975 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 CNPY2Q9Y2B0 182 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 FER1L4A9Z1Z3 1794 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 FLT4P35916 1363 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 GMNNO75496 209 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 ZBTB17Q13105 803 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 CEP85LQ5SZL2 805 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 INTS8Q75QN2 995 aaKnown RBP9.98□□□□□ -0.81
SYNE1-209ENST00000367257 ZNF804AQ7Z570 1209 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 SKAP1Q86WV1 359 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 EFCAB13Q8IY85 973 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 LZTS2Q9BRK4 669 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 SUFUQ9UMX1 484 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 PCK1P35558 622 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 PPFIA1Q13136 1202 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 TRPC3Q13507 836 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 Q6ZUG5 572 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 BAG1Q99933 345 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-209ENST00000367257 VCX3BQ9H321 246 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 TXNDC16Q9P2K2 825 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 PRAG1Q86YV5 1406 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 PI4KAP2A4QPH2 592 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 TSNAXIP1Q2TAA8 658 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 MAP3K21Q5TCX8 1036 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 PI4KAP1Q8N8J0 262 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 STMN2Q93045 179 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 MADDQ8WXG6 1647 aa9.98□□□□□ -0.81
SYNE1-209ENST00000367257 CUTAO60888 179 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 APBA1Q02410 837 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 DTHD1Q6ZMT9 781 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 SDAD1Q9NVU7 687 aaKnown RBP eCLIP9.97□□□□□ -0.81
SYNE1-209ENST00000367257 PAG1Q9NWQ8 432 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 C3P01024 1663 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 ARHGAP6O43182 974 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 STX10O60499 249 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 SLC8A1P32418 973 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 C8orf34Q49A92 452 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 TSC1Q92574 1164 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 SH3GL3Q99963 347 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 DNAJC25Q9H1X3 360 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 EMILIN1Q9Y6C2 1016 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 F6X3S4 739 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 PHACTR2O75167 634 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 FAM13AO94988 1023 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 IGHDP01880 384 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 ELF2Q15723 593 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 WHAMMQ8TF30 809 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 TRIM4Q9C037 500 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 EXOC7Q9UPT5 735 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 TEX14Q8IWB6 1497 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 NAPAP54920 295 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 IRX1P78414 480 aaPredicted RBP9.97□□□□□ -0.81
SYNE1-209ENST00000367257 LGSNQ5TDP6 509 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 HAUS3Q68CZ6 603 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 PHLDB2Q86SQ0 1253 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 UBL4BQ8N7F7 174 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 DDX27Q96GQ7 796 aaKnown RBP9.97□□□□□ -0.81
SYNE1-209ENST00000367257 CLSTN2Q9H4D0 955 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 ATP6V0A2Q9Y487 856 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 LAMC1P11047 1609 aa9.97□□□□□ -0.81
SYNE1-209ENST00000367257 RASSF2P50749 326 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 UBXN1Q04323 297 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 NAA16Q6N069 864 aaPredicted RBP9.96□□□□□ -0.81
SYNE1-209ENST00000367257 MMS22LQ6ZRQ5 1243 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 ZSWIM4Q9H7M6 989 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 DISP3Q9P2K9 1392 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 SLC4A4Q9Y6R1 1079 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 PFDN1O60925 122 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 CADPS2Q86UW7 1296 aa9.96□□□□□ -0.81
SYNE1-209ENST00000367257 DEXIO95424 95 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 EPB41P11171 864 aaKnown RBP9.96□□□□□ -0.82
SYNE1-209ENST00000367257 PAK2Q13177 524 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 BRD3Q15059 726 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 GSTA5Q7RTV2 222 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 ODF2LQ9ULJ1 636 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 KIAA1210Q9ULL0 1709 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 SPDYE3A6NKU9 549 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 ATP8B1O43520 1251 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 CALUO43852 315 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-209ENST00000367257 PPP2R3AQ06190 1150 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 CREB3L3Q68CJ9 461 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 UBE3BQ7Z3V4 1068 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 SMARCC2Q8TAQ2 1214 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 TRIM6Q9C030 488 aaPredicted RBP9.96□□□□□ -0.82
SYNE1-209ENST00000367257 MRFAP1Q9Y605 127 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 NRXN3Q9Y4C0 1643 aa9.96□□□□□ -0.82
SYNE1-209ENST00000367257 NDUFAB1O14561 156 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 GNA14O95837 355 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 CYP7A1P22680 504 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 HNRNPH2P55795 449 aaKnown RBP9.95□□□□□ -0.82
SYNE1-209ENST00000367257 LIN9Q5TKA1 542 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 SV2BQ7L1I2 683 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 CCDC82Q8N4S0 544 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 MMRN2Q9H8L6 949 aa9.95□□□□□ -0.82
SYNE1-209ENST00000367257 MAGEB6P1A0A0J9YX57 407 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms