RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 GUCD1Q96NT3 240 aa10.9□□□□□ -0.66
HMGB1P39-201ENST00000366304 KCNH4Q9UQ05 1017 aa10.9□□□□□ -0.66
HMGB1P39-201ENST00000366304 PLIN1O60240 522 aa10.89□□□□□ -0.67
HMGB1P39-201ENST00000366304 HOXD10P28358 340 aa10.89□□□□□ -0.67
HMGB1P39-201ENST00000366304 FLT3LGP49771 235 aa10.89□□□□□ -0.67
HMGB1P39-201ENST00000366304 FAM84BQ96KN1 310 aaPredicted RBP10.89□□□□□ -0.67
HMGB1P39-201ENST00000366304 RTN4Q9NQC3 1192 aaKnown RBP10.89□□□□□ -0.67
HMGB1P39-201ENST00000366304 ADAMTS8Q9UP79 889 aa10.89□□□□□ -0.67
HMGB1P39-201ENST00000366304 ANKRD18BA2A2Z9 1011 aa10.88□□□□□ -0.67
HMGB1P39-201ENST00000366304 WDHD1O75717 1129 aaPredicted RBP10.88□□□□□ -0.67
HMGB1P39-201ENST00000366304 FCGRTP55899 365 aa10.88□□□□□ -0.67
HMGB1P39-201ENST00000366304 PPATQ06203 517 aa10.88□□□□□ -0.67
HMGB1P39-201ENST00000366304 IFT57Q9NWB7 429 aa10.88□□□□□ -0.67
HMGB1P39-201ENST00000366304 TRIM32Q13049 653 aa10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 CCDC30Q5VVM6 783 aa10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 APOBEC3HQ6NTF7 200 aaKnown RBP10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 TDHQ8IZJ6 230 aa10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 PRDM6Q9NQX0 595 aa10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 ZNF112Q9UJU3 913 aa10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 IQSEC3Q9UPP2 1182 aaPredicted RBP10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 PRUNE2Q8WUY3 3088 aa10.87□□□□□ -0.67
HMGB1P39-201ENST00000366304 RPTORQ8N122 1335 aa10.86□□□□□ -0.67
HMGB1P39-201ENST00000366304 TNNI2P48788 182 aa10.86□□□□□ -0.67
HMGB1P39-201ENST00000366304 NEXNQ0ZGT2 675 aa10.86□□□□□ -0.67
HMGB1P39-201ENST00000366304 FAM161BQ96MY7 647 aa10.86□□□□□ -0.67
HMGB1P39-201ENST00000366304 RAPGEFL1Q9UHV5 662 aa10.86□□□□□ -0.67
HMGB1P39-201ENST00000366304 SLURP2P0DP57 97 aa10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 HIBADHP31937 336 aaKnown RBP10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 IFIT5Q13325 482 aaKnown RBP10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 IRF5Q13568 498 aa10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 NECAB2Q7Z6G3 386 aa10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 FAM83AQ86UY5 434 aa10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 PXYLP1Q8TE99 480 aa10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 PUS3Q9BZE2 481 aaKnown RBP10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 MGAMO43451 1857 aa10.85□□□□□ -0.67
HMGB1P39-201ENST00000366304 PFASO15067 1338 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 MUC3AQ02505 3323 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 GNAI1P63096 354 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 LMBR1LQ6UX01 489 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 ZFPM1Q8IX07 1006 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 TSR2Q969E8 191 aaKnown RBP10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 ZDHHC15Q96MV8 337 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 PARK7Q99497 189 aaKnown RBP10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 TMEM121BQ9BXQ6 578 aaPredicted RBP10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 ZNF341Q9BYN7 854 aa10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 UBE2OQ9C0C9 1292 aaKnown RBP10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 COL2A1P02458 1487 aaPredicted RBP10.84□□□□□ -0.67
HMGB1P39-201ENST00000366304 ATRNL1Q5VV63 1379 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 RPAP1Q9BWH6 1393 aaPredicted RBP10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 APAF1O14727 1248 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 HDLBPQ00341 1268 aaKnown RBP10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 NFIAQ12857 509 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 CHAF1AQ13111 956 aaPredicted RBP10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 NOL9Q5SY16 702 aaKnown RBP10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 FKBP1CQ5VVH2 108 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 LDHAL6AQ6ZMR3 332 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 FBXO33Q7Z6M2 555 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 CHMP3Q9Y3E7 222 aa10.83□□□□□ -0.68
HMGB1P39-201ENST00000366304 DDX60LQ5H9U9 1706 aaKnown RBP10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 PHF20L1A8MW92 1017 aa10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 TNPO2O14787 897 aaKnown RBP10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 TCP10Q12799 353 aa10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 DCAF15Q66K64 600 aa10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 LINS1Q8NG48 757 aa10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 TEKT1Q969V4 418 aa10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 FAM163AQ96GL9 167 aaPredicted RBP10.82□□□□□ -0.68
HMGB1P39-201ENST00000366304 A0A0G2JLL6 359 aaPredicted RBP10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 CXCL11O14625 94 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 MDM2Q00987 491 aaPredicted RBP10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 FLIIQ13045 1269 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 UBE4AQ14139 1066 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 RALBP1Q15311 655 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 FAM109BQ6ICB4 259 aaPredicted RBP10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 PRRT2Q7Z6L0 340 aaPredicted RBP10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 CCDC84Q86UT8 332 aaPredicted RBP10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 ANKLE1Q8NAG6 615 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 DNAAF4Q8WXU2 420 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 NBPF3Q9H094 633 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 C11orf49Q9H6J7 331 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 CNNM1Q9NRU3 951 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 FAM198AQ9UFP1 575 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 GJD2Q9UKL4 321 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 CDH23Q9H251 3354 aa10.81□□□□□ -0.68
HMGB1P39-201ENST00000366304 F6X3S4 739 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 COL6A1P12109 1028 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 LRRC26Q2I0M4 334 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 TREML2Q5T2D2 321 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 ANKRD13CQ8N6S4 541 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 FAM151AQ8WW52 585 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 KAZALD1Q96I82 304 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 CDX2Q99626 313 aaPredicted RBP10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 MRIQ9BWK5 157 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 MYH16Q9H6N6 1097 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 OGDHLQ9ULD0 1010 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 AFG3L2Q9Y4W6 797 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 ZHX2Q9Y6X8 837 aa10.8□□□□□ -0.68
HMGB1P39-201ENST00000366304 CAPN2P17655 700 aa10.79□□□□□ -0.68
HMGB1P39-201ENST00000366304 PTPRAP18433 802 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms