RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HSD3B7Q9H2F3 369 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 ATG3Q9NT62 314 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 SERTAD1Q9UHV2 236 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 RIPOR2Q9Y4F9 1068 aa13.95□□□□□ -0.18
CLIP3-201ENST00000360535 UBN2Q6ZU65 1347 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 KIF2AO00139 706 aaPredicted RBP13.94□□□□□ -0.18
CLIP3-201ENST00000360535 GNG11P61952 73 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 SEC31AO94979 1220 aaKnown RBP13.94□□□□□ -0.18
CLIP3-201ENST00000360535 HSPA2P54652 639 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 ETF1P62495 437 aaKnown RBP13.94□□□□□ -0.18
CLIP3-201ENST00000360535 KRBA2Q6ZNG9 492 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 USP49Q70CQ1 688 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 STAMQ92783 540 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 ZNF446Q9NWS9 450 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 PHRF1Q9P1Y6 1649 aaKnown RBP13.94□□□□□ -0.18
CLIP3-201ENST00000360535 PTPAQ15257 358 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLIP3-201ENST00000360535 NFE2L3Q9Y4A8 694 aa13.94□□□□□ -0.18
CLIP3-201ENST00000360535 MORC2Q9Y6X9 1032 aaPredicted RBP13.94□□□□□ -0.18
CLIP3-201ENST00000360535 CBFA2T2O43439 604 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 STARD3NLO95772 234 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 CLCN6P51797 869 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 TEX35Q5T0J7 233 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 PIGBQ92521 554 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 LY9Q9HBG7 655 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 ABCF2Q9UG63 623 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 SMIM22K7EJ46 135 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 BMP6P22004 513 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 IFNL3Q8IZI9 196 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 KRI1Q8N9T8 703 aaKnown RBP13.93□□□□□ -0.18
CLIP3-201ENST00000360535 IGDCC4Q8TDY8 1250 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 CABP5Q9NP86 173 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 PCDHB6Q9Y5E3 794 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 SPATA31A3Q5VYP0 1347 aa13.93□□□□□ -0.18
CLIP3-201ENST00000360535 PSDA5PKW4 1024 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 PDE8BO95263 885 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 CTSWP56202 376 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 MFSD6Q6ZSS7 791 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 NLRP10Q86W26 655 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 OXER1Q8TDS5 423 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 TRERF1Q96PN7 1200 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 BPIFA3Q9BQP9 254 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 SAMSN1Q9NSI8 373 aaKnown RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 WDR17Q8IZU2 1322 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 FMR1Q06787 632 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 CADPS2Q86UW7 1296 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 DHX58Q96C10 678 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 STRBPQ96SI9 672 aaKnown RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 MAP3K14Q99558 947 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 FAM217BQ9NTX9 383 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 SLC4A4Q9Y6R1 1079 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 CPDO75976 1380 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 TTF1Q15361 905 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 RESP18Q5W5W9 173 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 TRIM22Q8IYM9 498 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 MPHOSPH8Q99549 860 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 IRX2Q9BZI1 471 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 EPB41L4AQ9HCS5 686 aaPredicted RBP13.92□□□□□ -0.18
CLIP3-201ENST00000360535 ZBTB1Q9Y2K1 713 aa13.92□□□□□ -0.18
CLIP3-201ENST00000360535 NWD2Q9ULI1 1742 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 ERICH2A1L162 156 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 FAM205CA6NFA0 338 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 IKBKBO14920 756 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 PRDM1O75626 825 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 KIF20AO95235 890 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 SLFN14P0C7P3 912 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 RTN1Q16799 776 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 SLC4A8Q2Y0W8 1093 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 NOSTRINQ8IVI9 506 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 SMYD4Q8IYR2 804 aaPredicted RBP13.91□□□□□ -0.18
CLIP3-201ENST00000360535 BAG1Q99933 345 aaPredicted RBP13.91□□□□□ -0.18
CLIP3-201ENST00000360535 SEC31BQ9NQW1 1179 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 LRP2BPQ9P2M1 347 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 TACC3Q9Y6A5 838 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 CUTAO60888 179 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 WTAPQ15007 396 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 POSTNQ15063 836 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 NTRK3Q16288 839 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 GIGYF2Q6Y7W6 1299 aaKnown RBP13.91□□□□□ -0.18
CLIP3-201ENST00000360535 SMARCE1Q969G3 411 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 LZTFL1Q9NQ48 299 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 TUBE1Q9UJT0 475 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 MAN1B1Q9UKM7 699 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 PPP2R2CQ9Y2T4 447 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 PPP6R2O75170 966 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 CSF1RP07333 972 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 BCAMP50895 628 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 MTF1Q14872 753 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 TOGARAM2Q6ZUX3 1019 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 VSTM4Q8IW00 320 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 SDR42E1Q8WUS8 393 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 CCDC34Q96HJ3 373 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 WDR24Q96S15 920 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 HPSEQ9Y251 543 aa13.91□□□□□ -0.18
CLIP3-201ENST00000360535 TRPM3Q9HCF6 1732 aaPredicted RBP13.91□□□□□ -0.18
CLIP3-201ENST00000360535 MYO5AQ9Y4I1 1855 aaKnown RBP13.9□□□□□ -0.18
CLIP3-201ENST00000360535 FANCGO15287 622 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 MAP3K12Q12852 859 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 TERF2Q15554 542 aa13.9□□□□□ -0.18
CLIP3-201ENST00000360535 TMCO3Q6UWJ1 677 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms