RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 BANK1Q8NDB2 785 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 KIF18AQ8NI77 898 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 RBM8AQ9Y5S9 174 aaKnown RBP11.8□□□□□ -0.52
SYNE1-203ENST00000354674 LRMPQ12912 555 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 KRT222Q8N1A0 295 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 TTLL6Q8N841 843 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 COA1Q9GZY4 146 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 SNX14Q9Y5W7 946 aa11.8□□□□□ -0.52
SYNE1-203ENST00000354674 C6orf229H3BNL8 230 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 HSPD1P10809 573 aaKnown RBP11.79□□□□□ -0.52
SYNE1-203ENST00000354674 SKIDA1Q1XH10 827 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 MAGEB6Q8N7X4 407 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 WDR66Q8TBY9 1149 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 ZNF384Q8TF68 577 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 TMX4Q9H1E5 349 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-203ENST00000354674 FAM205AQ6ZU69 1335 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 A0A0G2JLW4 131 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 TULP2O00295 520 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 RASEFQ8IZ41 740 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 LRP2BPQ9P2M1 347 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 CD2APQ9Y5K6 639 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 ZNF646O15015 1829 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-203ENST00000354674 VPS53Q5VIR6 699 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 CREB3L3Q68CJ9 461 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 EYA3Q99504 573 aa11.79□□□□□ -0.52
SYNE1-203ENST00000354674 U3KPZ7 1027 aaPredicted RBP11.79□□□□□ -0.52
SYNE1-203ENST00000354674 CCDC88AQ3V6T2 1871 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 SLC27A2O14975 620 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 GPAA1O43292 621 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 DNAJC21Q5F1R6 531 aaKnown RBP11.78□□□□□ -0.52
SYNE1-203ENST00000354674 SYT10Q6XYQ8 523 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 DRC7Q8IY82 874 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 NSUN4Q96CB9 384 aaKnown RBP11.78□□□□□ -0.52
SYNE1-203ENST00000354674 KCNF1Q9H3M0 494 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 CHD4Q14839 1912 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 PSDA5PKW4 1024 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-203ENST00000354674 KMT5BQ4FZB7 885 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 CT47A1Q5JQC4 288 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-203ENST00000354674 STRBPQ96SI9 672 aaKnown RBP11.78□□□□□ -0.52
SYNE1-203ENST00000354674 ZDHHC9Q9Y397 364 aa11.78□□□□□ -0.52
SYNE1-203ENST00000354674 DHX16O60231 1041 aaKnown RBP11.77□□□□□ -0.52
SYNE1-203ENST00000354674 SPTY2D1Q68D10 685 aaPredicted RBP11.77□□□□□ -0.52
SYNE1-203ENST00000354674 ILDR2Q71H61 639 aa11.77□□□□□ -0.52
SYNE1-203ENST00000354674 ADGRA1Q86SQ6 560 aa11.77□□□□□ -0.52
SYNE1-203ENST00000354674 NOL10Q9BSC4 688 aaKnown RBP11.77□□□□□ -0.52
SYNE1-203ENST00000354674 ZC3H12CQ9C0D7 883 aaKnown RBP11.77□□□□□ -0.52
SYNE1-203ENST00000354674 ZMYM6O95789 1325 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 PTGS1P23219 599 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 TM6SF1Q9BZW5 370 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 ABCF2Q9UG63 623 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 RPAP1Q9BWH6 1393 aaPredicted RBP11.77□□□□□ -0.53
SYNE1-203ENST00000354674 MECOMQ03112 1051 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 PSMD1Q99460 953 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 RAI14Q9P0K7 980 aa11.77□□□□□ -0.53
SYNE1-203ENST00000354674 PRDX5P30044 214 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 ALX1Q15699 326 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 KRBA2Q6ZNG9 492 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 RTKN2Q8IZC4 609 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 SUPT20HQ8NEM7 779 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 ZCCHC17Q9NP64 241 aaKnown RBP11.76□□□□□ -0.53
SYNE1-203ENST00000354674 PIM2Q9P1W9 311 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 C21orf2O43822 256 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 NUCB2P80303 420 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 ELF2Q15723 593 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 CCDC93Q567U6 631 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 RNF20Q5VTR2 975 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 TBC1D22AQ8WUA7 517 aa11.76□□□□□ -0.53
SYNE1-203ENST00000354674 RIOK1Q9BRS2 568 aaKnown RBP11.76□□□□□ -0.53
SYNE1-203ENST00000354674 RIMBP2O15034 1052 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 AP5Z1O43299 807 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 CYP7A1P22680 504 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 NAA16Q6N069 864 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-203ENST00000354674 PODNQ7Z5L7 613 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 AIDAQ96BJ3 306 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 VPS33BQ9H267 617 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 RASSF4Q9H2L5 321 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 LAMA4Q16363 1823 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 CYP21A2P08686 494 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 ZKSCAN1P17029 563 aaPredicted RBP11.75□□□□□ -0.53
SYNE1-203ENST00000354674 GNAT2P19087 354 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 SLC20A2Q08357 652 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 SOGA3Q5TF21 947 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 CCDC112Q8NEF3 446 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 ZSWIM6Q9HCJ5 1215 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 SUGT1Q9Y2Z0 365 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 MBD4O95243 580 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 FGAP02671 866 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 LDHBP07195 334 aaKnown RBP11.75□□□□□ -0.53
SYNE1-203ENST00000354674 GRIK5Q16478 980 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 ADCK5Q3MIX3 580 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 KIAA1524Q8TCG1 905 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 TAF6LQ9Y6J9 622 aa11.75□□□□□ -0.53
SYNE1-203ENST00000354674 CLGNO14967 610 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 FKBP1AP62942 108 aaKnown RBP11.74□□□□□ -0.53
SYNE1-203ENST00000354674 FER1L6Q2WGJ9 1857 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 GIMAP6Q6P9H5 292 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 LCORLQ8N3X6 602 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 NRBP1Q9UHY1 535 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 PSME4Q14997 1843 aa11.74□□□□□ -0.53
SYNE1-203ENST00000354674 FBXO38Q6PIJ6 1188 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms