RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 PODNQ7Z5L7 613 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 BANK1Q8NDB2 785 aa14.81□□□□□ -0.04
COL6A3-202ENST00000347401 EIF3CLB5ME19 914 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 FAM13AO94988 1023 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 OAS2P29728 719 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 EIF3CQ99613 913 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 SPZ1Q9BXG8 430 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 RBM8AQ9Y5S9 174 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 C8orf34Q49A92 452 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 TXNDC2Q86VQ3 553 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 DDX27Q96GQ7 796 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 TMX1Q9H3N1 280 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 SAR1BQ9Y6B6 198 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 TSPY3P0CV98 308 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 TSPY8P0CW00 308 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 RPAINQ86UA6 219 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 RABGGTAQ92696 567 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 POLR3AO14802 1390 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 KIF1CO43896 1103 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 IL15P40933 162 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 Q6ZUG5 572 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 ZNF622Q969S3 477 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 PSMD1Q99460 953 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 ZKSCAN3Q9BRR0 538 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 MRC2Q9UBG0 1479 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 CUTAO60888 179 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 LZTS2Q9BRK4 669 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 EIF3DO15371 548 aaKnown RBP eCLIP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 APOBRQ0VD83 1088 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 SMTNP53814 917 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 NBPF9Q3BBW0 867 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 RRP36Q96EU6 259 aaKnown RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 ZC4H2Q9NQZ6 224 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 RNF216Q9NWF9 866 aaPredicted RBP14.8□□□□□ -0.04
COL6A3-202ENST00000347401 KDM5DQ9BY66 1539 aa14.8□□□□□ -0.04
COL6A3-202ENST00000347401 ESRRGP62508 458 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 HHATQ5VTY9 493 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 E7EVH7 732 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 SMARCA5O60264 1052 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-202ENST00000347401 BBOF1Q8ND07 529 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 RHPN1Q8TCX5 695 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 SDCCAG3Q96C92 435 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CCDC169A6NNP5 214 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 WDR44Q5JSH3 913 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 HAUS1Q96CS2 278 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CNOT10Q9H9A5 744 aaKnown RBP14.79□□□□□ -0.04
COL6A3-202ENST00000347401 KIF24Q5T7B8 1368 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CACYBPQ9HB71 228 aaKnown RBP14.79□□□□□ -0.04
COL6A3-202ENST00000347401 PDE1CQ14123 709 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CCDC68Q9H2F9 335 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CLSTN2Q9H4D0 955 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 RGS16O15492 202 aaPredicted RBP14.79□□□□□ -0.04
COL6A3-202ENST00000347401 C20orf194Q5TEA3 1177 aa14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CCDC124Q96CT7 223 aaKnown RBP14.79□□□□□ -0.04
COL6A3-202ENST00000347401 CDC25BP30305 580 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 DBN1Q16643 649 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 SV2BQ7L1I2 683 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 BRF1Q92994 677 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 ZNF830Q96NB3 372 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 AGTPBP1Q9UPW5 1226 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 DKC1O60832 514 aaKnown RBP eCLIP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 DCTPP1Q9H773 170 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 PNMA8AQ86V59 439 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 TRIML1Q8N9V2 468 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 TOPBP1Q92547 1522 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 NUTM2BA6NNL0 878 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 NUTM2EB1AL46 878 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 TRIM42Q8IWZ5 723 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 CCHCR1Q8TD31 782 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 TLDC2A0PJX2 215 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 TMEM87AQ8NBN3 555 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 KIF11P52732 1056 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 NAA16Q6N069 864 aaPredicted RBP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 TMEM87BQ96K49 555 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 PRDM11Q9NQV5 511 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 KIAA0586Q9BVV6 1533 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 MAP3K7CLP57077 242 aa14.78□□□□□ -0.04
COL6A3-202ENST00000347401 GFM2Q969S9 779 aaKnown RBP14.78□□□□□ -0.04
COL6A3-202ENST00000347401 SPOPO43791 374 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 SH3BP5O60239 455 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 SUN1O94901 812 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 PDE6BP35913 854 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 STAG1Q8WVM7 1258 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 CAPS2Q9BXY5 557 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 WWC3Q9ULE0 1092 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 ELF2Q15723 593 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 RPGRQ92834 1020 aaKnown RBP14.77□□□□□ -0.04
COL6A3-202ENST00000347401 RBSNQ9H1K0 784 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 EXOC7Q9UPT5 735 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 KDM2BQ8NHM5 1336 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 PSDA5PKW4 1024 aaPredicted RBP14.77□□□□□ -0.04
COL6A3-202ENST00000347401 CENPKQ9BS16 269 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 FAM204AQ9H8W3 233 aa14.77□□□□□ -0.04
COL6A3-202ENST00000347401 GEN1Q17RS7 908 aa14.77□□□□□ -0.05
COL6A3-202ENST00000347401 OSCARQ8IYS5 282 aa14.77□□□□□ -0.05
COL6A3-202ENST00000347401 NUDT16Q96DE0 195 aaKnown RBP14.77□□□□□ -0.05
COL6A3-202ENST00000347401 THAP12O43422 761 aa14.77□□□□□ -0.05
COL6A3-202ENST00000347401 COG7P83436 770 aa14.77□□□□□ -0.05
COL6A3-202ENST00000347401 CDAN1Q8IWY9 1227 aa14.77□□□□□ -0.05
COL6A3-202ENST00000347401 BABAM1Q9NWV8 329 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms