RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 GUCY1A2P33402 732 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 SDR42E1Q8WUS8 393 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 KIAA1468Q9P260 1216 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 LTBP4Q8N2S1 1624 aa17.93■□□□□ 0.46
UPF3B-202ENST00000345865 GOLGA6L19H0YKK7 550 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 ZNF202O95125 648 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 PTPAQ15257 358 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CLEC4GQ6UXB4 293 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CNNM2Q9H8M5 875 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CLIP2Q9UDT6 1046 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 PFKFB1P16118 471 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 GNAT2P19087 354 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CYP7A1P22680 504 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CMA1P23946 247 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 U2AF2P26368 475 aaKnown RBP eCLIP17.92■□□□□ 0.462e-7■□□□□ 9.2
UPF3B-202ENST00000345865 CPLX2Q6PUV4 134 aaKnown RBP17.92■□□□□ 0.46
UPF3B-202ENST00000345865 SMARCC1Q92922 1105 aaPredicted RBP17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CDC5LQ99459 802 aaKnown RBP17.92■□□□□ 0.46
UPF3B-202ENST00000345865 MAP3K14Q99558 947 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 SLC26A6Q9BXS9 759 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 KRT23Q9C075 422 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 ABCF2Q9UG63 623 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 ZNF652Q9Y2D9 606 aa17.92■□□□□ 0.46
UPF3B-202ENST00000345865 CCDC69A6NI79 296 aa17.91■□□□□ 0.46
UPF3B-202ENST00000345865 DPCR1Q3MIW9 517 aa17.91■□□□□ 0.46
UPF3B-202ENST00000345865 NACAP1Q9BZK3 213 aa17.91■□□□□ 0.46
UPF3B-202ENST00000345865 TOMM22Q9NS69 142 aa17.91■□□□□ 0.46
UPF3B-202ENST00000345865 RBM10P98175 930 aaKnown RBP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 SF3B3Q15393 1217 aaKnown RBP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 FAM98CQ17RN3 349 aaKnown RBP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 BICDL1Q6ZP65 573 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 ANKRD18AQ8IVF6 992 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 CMTR1Q8N1G2 835 aaKnown RBP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 AOPEPQ8N6M6 819 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 CACTINQ8WUQ7 758 aaKnown RBP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 BCL2L12Q9HB09 334 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 CACNA1SQ13698 1873 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 CDC25BP30305 580 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 NID2Q14112 1375 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 ZNF384Q8TF68 577 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 CELF1Q92879 486 aaKnown RBP17.9■□□□□ 0.46
UPF3B-202ENST00000345865 MINPP1Q9UNW1 487 aa17.9■□□□□ 0.46
UPF3B-202ENST00000345865 BECN2A8MW95 431 aa17.89■□□□□ 0.46
UPF3B-202ENST00000345865 FMNL1O95466 1100 aaPredicted RBP17.89■□□□□ 0.46
UPF3B-202ENST00000345865 IFNAR1P17181 557 aa17.89■□□□□ 0.46
UPF3B-202ENST00000345865 PPARAQ07869 468 aa17.89■□□□□ 0.46
UPF3B-202ENST00000345865 SSRP1Q08945 709 aaKnown RBP17.89■□□□□ 0.46
UPF3B-202ENST00000345865 SHC4Q6S5L8 630 aa17.89■□□□□ 0.46
UPF3B-202ENST00000345865 CEP57L1Q8IYX8 460 aa17.89■□□□□ 0.46
UPF3B-202ENST00000345865 BSDC1Q9NW68 430 aaPredicted RBP17.89■□□□□ 0.46
UPF3B-202ENST00000345865 STK36Q9NRP7 1315 aa17.89■□□□□ 0.45
UPF3B-202ENST00000345865 HSP90AA2PQ14568 343 aaPredicted RBP17.89■□□□□ 0.45
UPF3B-202ENST00000345865 TBC1D9BQ66K14 1250 aa17.89■□□□□ 0.45
UPF3B-202ENST00000345865 CCDC82Q8N4S0 544 aa17.89■□□□□ 0.45
UPF3B-202ENST00000345865 MRFAP1L1Q96HT8 127 aa17.89■□□□□ 0.45
UPF3B-202ENST00000345865 CLIC6Q96NY7 704 aa17.89■□□□□ 0.45
UPF3B-202ENST00000345865 RIOK1Q9BRS2 568 aaKnown RBP17.89■□□□□ 0.45
UPF3B-202ENST00000345865 RAI14Q9P0K7 980 aa17.89■□□□□ 0.45
UPF3B-202ENST00000345865 BIN1O00499 593 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 ARID5BQ14865 1188 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 WTAPQ15007 396 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 NBPF11Q86T75 865 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 MYRIPQ8NFW9 859 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 FAM84BQ96KN1 310 aaPredicted RBP17.88■□□□□ 0.45
UPF3B-202ENST00000345865 BAZ2AQ9UIF9 1905 aaKnown RBP17.88■□□□□ 0.45
UPF3B-202ENST00000345865 MINDY4BA8MYZ0 360 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 RRP9O43818 475 aaKnown RBP17.88■□□□□ 0.45
UPF3B-202ENST00000345865 PPP6R2O75170 966 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 SLC3A2P08195 630 aaKnown RBP17.88■□□□□ 0.45
UPF3B-202ENST00000345865 KLRK1P26718 216 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 UBE4AQ14139 1066 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 HPSEQ9Y251 543 aa17.88■□□□□ 0.45
UPF3B-202ENST00000345865 MAGEB6P1A0A0J9YX57 407 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 BTBD18B2RXH4 712 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 DYNLL1P63167 89 aaKnown RBP17.87■□□□□ 0.45
UPF3B-202ENST00000345865 GNL2Q13823 731 aaKnown RBP17.87■□□□□ 0.45
UPF3B-202ENST00000345865 KCNJ14Q9UNX9 436 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 MYH2Q9UKX2 1941 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 CYP2D7A0A087X1C5 515 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 TRIM29Q14134 588 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 RTN1Q16799 776 aa17.87■□□□□ 0.45
UPF3B-202ENST00000345865 ZNF831Q5JPB2 1677 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 DYNC1I1O14576 645 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 TOB1P50616 345 aaPredicted RBP17.86■□□□□ 0.45
UPF3B-202ENST00000345865 PIP4K2BP78356 416 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 SEC23AQ15436 765 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 PRIMPOLQ96LW4 560 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 FAM13BQ9NYF5 915 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 SCN7AQ01118 1682 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 MMP1P03956 469 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 SYKP43405 635 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 SART3Q15020 963 aaKnown RBP17.86■□□□□ 0.45
UPF3B-202ENST00000345865 ZNF654Q8IZM8 581 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 CRACR2BQ8N4Y2 399 aaPredicted RBP17.86■□□□□ 0.45
UPF3B-202ENST00000345865 TSC1Q92574 1164 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.86■□□□□ 0.45
UPF3B-202ENST00000345865 SRP68Q9UHB9 627 aaKnown RBP17.86■□□□□ 0.45
UPF3B-202ENST00000345865 ANAPC4Q9UJX5 808 aa17.86■□□□□ 0.45
UPF3B-202ENST00000345865 EVX2Q03828 476 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms