RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 MKRN1Q9UHC7 482 aaKnown RBP26.57■■□□□ 1.84
SDC3-202ENST00000339394 CNTNAP1P78357 1384 aa26.57■■□□□ 1.84
SDC3-202ENST00000339394 FOXP2O15409 715 aa26.56■■□□□ 1.84
SDC3-202ENST00000339394 ENTPD3O75355 529 aa26.56■■□□□ 1.84
SDC3-202ENST00000339394 TNNI2P48788 182 aa26.56■■□□□ 1.84
SDC3-202ENST00000339394 KRT26Q7Z3Y9 468 aa26.56■■□□□ 1.84
SDC3-202ENST00000339394 ATP8A2Q9NTI2 1148 aa26.56■■□□□ 1.84
SDC3-202ENST00000339394 APPP05067 770 aa26.55■■□□□ 1.84
SDC3-202ENST00000339394 HSPD1P10809 573 aaKnown RBP26.55■■□□□ 1.84
SDC3-202ENST00000339394 FAM151AQ8WW52 585 aa26.55■■□□□ 1.84
SDC3-202ENST00000339394 TMEM39BQ9GZU3 492 aa26.55■■□□□ 1.84
SDC3-202ENST00000339394 OSBPL5Q9H0X9 879 aaPredicted RBP26.55■■□□□ 1.84
SDC3-202ENST00000339394 CDC37L1Q7L3B6 337 aa26.54■■□□□ 1.84
SDC3-202ENST00000339394 ADM5C9JUS6 153 aa26.54■■□□□ 1.84
SDC3-202ENST00000339394 USP48Q86UV5 1035 aa26.54■■□□□ 1.84
SDC3-202ENST00000339394 IFNL3Q8IZI9 196 aa26.54■■□□□ 1.84
SDC3-202ENST00000339394 EPB41L4AQ9HCS5 686 aaPredicted RBP26.54■■□□□ 1.84
SDC3-202ENST00000339394 CHADLQ6NUI6 762 aa26.53■■□□□ 1.84
SDC3-202ENST00000339394 GIMAP6Q6P9H5 292 aa26.53■■□□□ 1.84
SDC3-202ENST00000339394 DLK2Q6UY11 383 aa26.53■■□□□ 1.84
SDC3-202ENST00000339394 GLIS2Q9BZE0 524 aaPredicted RBP26.53■■□□□ 1.84
SDC3-202ENST00000339394 RPAP1Q9BWH6 1393 aaPredicted RBP26.53■■□□□ 1.84
SDC3-202ENST00000339394 PRAMEF18Q5VWM3 479 aa26.52■■□□□ 1.84
SDC3-202ENST00000339394 DDRGK1Q96HY6 314 aa26.52■■□□□ 1.84
SDC3-202ENST00000339394 NACAP1Q9BZK3 213 aa26.52■■□□□ 1.84
SDC3-202ENST00000339394 MCM9Q9NXL9 1143 aa26.52■■□□□ 1.84
SDC3-202ENST00000339394 SH3BP5LQ7L8J4 393 aa26.51■■□□□ 1.83
SDC3-202ENST00000339394 CDAN1Q8IWY9 1227 aa26.51■■□□□ 1.83
SDC3-202ENST00000339394 TEPSINQ96N21 525 aa26.51■■□□□ 1.83
SDC3-202ENST00000339394 SAP30BPQ9UHR5 308 aaKnown RBP26.51■■□□□ 1.83
SDC3-202ENST00000339394 PALD1Q9ULE6 856 aa26.51■■□□□ 1.83
SDC3-202ENST00000339394 PPP2R3BQ9Y5P8 575 aa26.51■■□□□ 1.83
SDC3-202ENST00000339394 DDTLA6NHG4 134 aaPredicted RBP26.5■■□□□ 1.83
SDC3-202ENST00000339394 TOMM70O94826 608 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 ZSCAN29Q8IWY8 852 aaPredicted RBP26.5■■□□□ 1.83
SDC3-202ENST00000339394 DSCC1Q9BVC3 393 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 FGAP02671 866 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 TDO2P48775 406 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 PTH1RQ03431 593 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 C8orf34Q49A92 452 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 KIAA1211Q6ZU35 1233 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 NAPBQ9H115 298 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 ANO2Q9NQ90 1003 aa26.5■■□□□ 1.83
SDC3-202ENST00000339394 USP17L12C9JPN9 530 aa26.49■■□□□ 1.83
SDC3-202ENST00000339394 USP17L21D6R901 530 aa26.49■■□□□ 1.83
SDC3-202ENST00000339394 SLC4A8Q2Y0W8 1093 aa26.49■■□□□ 1.83
SDC3-202ENST00000339394 CTR9Q6PD62 1173 aa26.49■■□□□ 1.83
SDC3-202ENST00000339394 LSG1Q9H089 658 aaKnown RBP26.49■■□□□ 1.83
SDC3-202ENST00000339394 DHX36Q9H2U1 1008 aaKnown RBP26.49■■□□□ 1.83
SDC3-202ENST00000339394 ATRNL1Q5VV63 1379 aa26.48■■□□□ 1.83
SDC3-202ENST00000339394 ALX1Q15699 326 aa26.48■■□□□ 1.83
SDC3-202ENST00000339394 ECM29Q5VYK3 1845 aa26.48■■□□□ 1.83
SDC3-202ENST00000339394 ITGBL1O95965 494 aaPredicted RBP26.47■■□□□ 1.83
SDC3-202ENST00000339394 POLR3DP05423 398 aaPredicted RBP26.47■■□□□ 1.83
SDC3-202ENST00000339394 NBPF12Q5TAG4 269 aaPredicted RBP26.47■■□□□ 1.83
SDC3-202ENST00000339394 CSRNP1Q96S65 589 aa26.47■■□□□ 1.83
SDC3-202ENST00000339394 TRAF5O00463 557 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 PLCD1P51178 756 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 SMC1BQ8NDV3 1235 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 RBM46Q8TBY0 533 aaKnown RBP26.46■■□□□ 1.83
SDC3-202ENST00000339394 MAP4K1Q92918 833 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 ARPP21Q9UBL0 812 aaPredicted RBP26.46■■□□□ 1.83
SDC3-202ENST00000339394 CYP2D7A0A087X1C5 515 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 CYP2D6P10635 497 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 SBK1Q52WX2 424 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 CDCA5Q96FF9 252 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 PI4KBQ9UBF8 816 aa26.46■■□□□ 1.83
SDC3-202ENST00000339394 COL2A1P02458 1487 aaPredicted RBP26.45■■□□□ 1.82
SDC3-202ENST00000339394 EVX2Q03828 476 aa26.45■■□□□ 1.82
SDC3-202ENST00000339394 FMR1Q06787 632 aaKnown RBP eCLIP26.45■■□□□ 1.82
SDC3-202ENST00000339394 C12orf60Q5U649 245 aa26.45■■□□□ 1.82
SDC3-202ENST00000339394 TTC6Q86TZ1 520 aa26.45■■□□□ 1.82
SDC3-202ENST00000339394 ZMYM6O95789 1325 aa26.45■■□□□ 1.82
SDC3-202ENST00000339394 MINDY4BA8MYZ0 360 aa26.44■■□□□ 1.82
SDC3-202ENST00000339394 SMIM22K7EJ46 135 aa26.44■■□□□ 1.82
SDC3-202ENST00000339394 REC8O95072 547 aa26.44■■□□□ 1.82
SDC3-202ENST00000339394 HLA-DOAP06340 250 aa26.44■■□□□ 1.82
SDC3-202ENST00000339394 SUPT20HL1Q3ZLR7 823 aa26.44■■□□□ 1.82
SDC3-202ENST00000339394 AMOTL1Q8IY63 956 aa26.44■■□□□ 1.82
SDC3-202ENST00000339394 SLURP2P0DP57 97 aa26.42■■□□□ 1.82
SDC3-202ENST00000339394 CTNNA3Q9UI47 895 aa26.42■■□□□ 1.82
SDC3-202ENST00000339394 SEC24BO95487 1268 aa26.41■■□□□ 1.82
SDC3-202ENST00000339394 MIGA2Q7L4E1 593 aa26.41■■□□□ 1.82
SDC3-202ENST00000339394 U3KPZ7 1027 aaPredicted RBP26.41■■□□□ 1.82
SDC3-202ENST00000339394 CDK5RAP2Q96SN8 1893 aa26.41■■□□□ 1.82
SDC3-202ENST00000339394 POLR2AP24928 1970 aaKnown RBP26.41■■□□□ 1.82
SDC3-202ENST00000339394 FOXP4Q8IVH2 680 aaPredicted RBP26.41■■□□□ 1.82
SDC3-202ENST00000339394 EHD4Q9H223 541 aa26.41■■□□□ 1.82
SDC3-202ENST00000339394 SERPINB13Q9UIV8 391 aa26.41■■□□□ 1.82
SDC3-202ENST00000339394 RBM8AQ9Y5S9 174 aaKnown RBP26.41■■□□□ 1.82
SDC3-202ENST00000339394 FOCADQ5VW36 1801 aa26.41■■□□□ 1.82
SDC3-202ENST00000339394 PPARAQ07869 468 aa26.4■■□□□ 1.82
SDC3-202ENST00000339394 METTL16Q86W50 562 aaKnown RBP26.4■■□□□ 1.82
SDC3-202ENST00000339394 HOOK2Q96ED9 719 aa26.4■■□□□ 1.82
SDC3-202ENST00000339394 HAND2P61296 217 aa26.39■■□□□ 1.82
SDC3-202ENST00000339394 MAP3K10Q02779 954 aa26.39■■□□□ 1.82
SDC3-202ENST00000339394 GABPAQ06546 454 aa26.39■■□□□ 1.82
SDC3-202ENST00000339394 FSTL1Q12841 308 aa26.39■■□□□ 1.82
SDC3-202ENST00000339394 DYNLL2Q96FJ2 89 aa26.39■■□□□ 1.82
SDC3-202ENST00000339394 ZNF408Q9H9D4 720 aa26.39■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms