RNA–Protein interactions for RNA: ENST00000337620.8

CBX3-201, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 2,128 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-201ENST00000337620 ANAPC4Q9UJX5 808 aa17.36■□□□□ 0.37
CBX3-201ENST00000337620 NFKBIEO00221 500 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 USP17L8P0C7I0 530 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 CRKP46108 304 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 RHBDL3P58872 404 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 HHIPL2Q6UWX4 724 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 NKX2-3Q8TAU0 364 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 KRT23Q9C075 422 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 ARPP21Q9UBL0 812 aaPredicted RBP17.35■□□□□ 0.37
CBX3-201ENST00000337620 ZNRF3Q9ULT6 936 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 COL4A5P29400 1685 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 CYP2D6P10635 497 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 RBM5P52756 815 aaKnown RBP eCLIP17.35■□□□□ 0.37
CBX3-201ENST00000337620 ANTXR2P58335 489 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 CYB5R4Q7L1T6 521 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 CCDC83Q8IWF9 413 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 NECAB1Q8N987 351 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 FHDC1Q9C0D6 1143 aaPredicted RBP17.35■□□□□ 0.37
CBX3-201ENST00000337620 CHMP5Q9NZZ3 219 aa17.35■□□□□ 0.37
CBX3-201ENST00000337620 MKRN1Q9UHC7 482 aaKnown RBP17.35■□□□□ 0.37
CBX3-201ENST00000337620 KDM4AO75164 1064 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 DDIT3P35638 169 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 EVX2Q03828 476 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 APOBRQ0VD83 1088 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 STK3Q13188 491 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 JDP2Q8WYK2 163 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 INTS4Q96HW7 963 aaKnown RBP17.34■□□□□ 0.37
CBX3-201ENST00000337620 FER1L6Q2WGJ9 1857 aa17.34■□□□□ 0.37
CBX3-201ENST00000337620 PSMD14O00487 310 aa17.33■□□□□ 0.37
CBX3-201ENST00000337620 SBK1Q52WX2 424 aa17.33■□□□□ 0.37
CBX3-201ENST00000337620 AMOTL1Q8IY63 956 aa17.33■□□□□ 0.37
CBX3-201ENST00000337620 AGXT2Q9BYV1 514 aa17.33■□□□□ 0.37
CBX3-201ENST00000337620 CWC22Q9HCG8 908 aaKnown RBP17.33■□□□□ 0.37
CBX3-201ENST00000337620 GPHNQ9NQX3 736 aaPredicted RBP17.33■□□□□ 0.37
CBX3-201ENST00000337620 USP40Q9NVE5 1235 aa17.33■□□□□ 0.37
CBX3-201ENST00000337620 SAP30BPQ9UHR5 308 aaKnown RBP17.33■□□□□ 0.37
CBX3-201ENST00000337620 NAP1L2Q9ULW6 460 aaPredicted RBP17.33■□□□□ 0.37
CBX3-201ENST00000337620 RSBN1LQ6PCB5 846 aaPredicted RBP17.33■□□□□ 0.36
CBX3-201ENST00000337620 MRIQ9BWK5 157 aa17.33■□□□□ 0.36
CBX3-201ENST00000337620 ZSWIM5Q9P217 1185 aa17.33■□□□□ 0.36
CBX3-201ENST00000337620 TIAM2Q8IVF5 1701 aa17.33■□□□□ 0.36
CBX3-201ENST00000337620 POLR3DP05423 398 aaPredicted RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 SLC3A2P08195 630 aaKnown RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 VIL1P09327 827 aaKnown RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 HDLBPQ00341 1268 aaKnown RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 RASSF7Q02833 373 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 APOBEC3HQ6NTF7 200 aaKnown RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 WDR19Q8NEZ3 1342 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 ZNF646O15015 1829 aaPredicted RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 PRDM1O75626 825 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 PICALMQ13492 652 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 C12orf60Q5U649 245 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 CDC42EP5Q6NZY7 148 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 ZDHHC15Q96MV8 337 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 SERPINA10Q9UK55 444 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.32■□□□□ 0.36
CBX3-201ENST00000337620 PCDHAC2Q9Y5I4 1007 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 FLT1P17948 1338 aa17.32■□□□□ 0.36
CBX3-201ENST00000337620 SRCAPQ6ZRS2 3230 aa17.31■□□□□ 0.36
CBX3-201ENST00000337620 FBXL16Q8N461 479 aa17.31■□□□□ 0.36
CBX3-201ENST00000337620 CIZ1Q9ULV3 898 aaPredicted RBP17.31■□□□□ 0.36
CBX3-201ENST00000337620 ZBTB12Q9Y330 459 aaPredicted RBP17.31■□□□□ 0.36
CBX3-201ENST00000337620 MYO3BQ8WXR4 1341 aa17.31■□□□□ 0.36
CBX3-201ENST00000337620 ADAMTSL1Q8N6G6 1762 aa17.31■□□□□ 0.36
CBX3-201ENST00000337620 ESR2Q92731 530 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 UTRNP46939 3433 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 IFIT3O14879 490 aaKnown RBP17.3■□□□□ 0.36
CBX3-201ENST00000337620 RANBP6O60518 1105 aaKnown RBP17.3■□□□□ 0.36
CBX3-201ENST00000337620 PLCD1P51178 756 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 CXCL9Q07325 125 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 PDE4BQ07343 736 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 ST3GAL1Q11201 340 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 TMEM87BQ96K49 555 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 ZKSCAN3Q9BRR0 538 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 ANGEL1Q9UNK9 670 aaKnown RBP17.3■□□□□ 0.36
CBX3-201ENST00000337620 CDK5RAP2Q96SN8 1893 aa17.3■□□□□ 0.36
CBX3-201ENST00000337620 DTNBO60941 627 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 WDHD1O75717 1129 aaPredicted RBP17.29■□□□□ 0.36
CBX3-201ENST00000337620 PCP11498 1178 aaKnown RBP17.29■□□□□ 0.36
CBX3-201ENST00000337620 TMEM67Q5HYA8 995 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 SMC3Q9UQE7 1217 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 LTBP3Q9NS15 1303 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 PSME4Q14997 1843 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 NAV1Q8NEY1 1877 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 KLF18A0A0U1RQI7 1052 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 SH2B2O14492 632 aaPredicted RBP17.29■□□□□ 0.36
CBX3-201ENST00000337620 FGRP09769 529 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 CFAP100Q494V2 611 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 CIAPIN1Q6FI81 312 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 IGDCC4Q8TDY8 1250 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 DYNLL2Q96FJ2 89 aa17.29■□□□□ 0.36
CBX3-201ENST00000337620 ZNF274Q96GC6 653 aaPredicted RBP17.29■□□□□ 0.36
CBX3-201ENST00000337620 LAMB1P07942 1786 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 PDIA3P30101 505 aaKnown RBP17.28■□□□□ 0.36
CBX3-201ENST00000337620 SART3Q15020 963 aaKnown RBP17.28■□□□□ 0.36
CBX3-201ENST00000337620 ARHGAP27Q6ZUM4 889 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 OGFOD1Q8N543 542 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 GTF3C6Q969F1 213 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 GMLQ99445 158 aa17.28■□□□□ 0.36
CBX3-201ENST00000337620 SYT17Q9BSW7 474 aa17.28■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms