RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 MUC22E2RYF6 1773 aaPredicted RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 DKK1O94907 266 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 STARD3NLO95772 234 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 TOP3BO95985 862 aaKnown RBP2.23□□□□□ -2.05
LINC00643-201ENST00000334389 ATP2B4P23634 1241 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SUPT20HL1Q3ZLR7 823 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 MORN1Q5T089 497 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 RAPGEF4Q8WZA2 1011 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 LEMD3Q9Y2U8 911 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SQORQ9Y6N5 450 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 KIAA1217Q5T5P2 1943 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 ELP1O95163 1332 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 SALL3Q9BXA9 1300 aa2.23□□□□□ -2.05
LINC00643-201ENST00000334389 HSFX4A0A1B0GTS1 333 aaPredicted RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 HSFX3A0A1B0GWH4 333 aaPredicted RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 TBC1D4O60343 1298 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 ZC3H6P61129 1189 aaKnown RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 KIF22Q14807 665 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 FAM110CQ1W6H9 321 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 CFAP70Q5T0N1 1121 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 RAB44Q7Z6P3 723 aaPredicted RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 RASEFQ8IZ41 740 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 GMCL1P1Q8NEA9 526 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 DUSP9Q99956 384 aaKnown RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 COA1Q9GZY4 146 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 CTNNA3Q9UI47 895 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 MAP3K15Q6ZN16 1313 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 PRR23AA6NEV1 266 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 MOXD2PA6NHM9 499 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 FARP2O94887 1054 aaPredicted RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 CNR2P34972 360 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 NF2P35240 595 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 CDK7P50613 346 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 FCGRTP55899 365 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 PPIGQ13427 754 aaKnown RBP eCLIP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 TNFAIP1Q13829 316 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 LRRFIP1Q32MZ4 808 aaKnown RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 MIA3Q5JRA6 1907 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 C1orf228Q6PIY5 440 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 PTF1AQ7RTS3 328 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 ANKRD13AQ8IZ07 590 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 DDX55Q8NHQ9 600 aaKnown RBP eCLIP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 EDAQ92838 391 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 PARK7Q99497 189 aaKnown RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 WDR18Q9BV38 432 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 PLVAPQ9BX97 442 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 SRRTQ9BXP5 876 aaKnown RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 NEUROG3Q9Y4Z2 214 aa2.22□□□□□ -2.05
LINC00643-201ENST00000334389 COL27A1Q8IZC6 1860 aaPredicted RBP2.22□□□□□ -2.05
LINC00643-201ENST00000334389 BHMG1C9JSJ3 638 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 H7C1D1 291 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 SEMA3EO15041 775 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 RB1P06400 928 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 NLRP6P59044 892 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 UBE3AQ05086 875 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CTC1Q2NKJ3 1217 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 FASTKD5Q7L8L6 764 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 ADHFE1Q8IWW8 467 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 HSPBP1Q9NZL4 362 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 WASF3Q9UPY6 502 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 DYNC1LI1Q9Y6G9 523 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 ADAMTS9Q9P2N4 1935 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 ZNF106Q9H2Y7 1883 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CCDC163A0A0D9SF12 145 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 SOX1O00570 391 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 GNPATO15228 680 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 KPNA6O60684 536 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 LILRB3O75022 631 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 USP2O75604 605 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CDK4P11802 303 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 UBTFP17480 764 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 SMCPP49901 116 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 GHRHRQ02643 423 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 PABPC4Q13310 644 aaKnown RBP eCLIP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 NEUROD2Q15784 382 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 TIGD5Q53EQ6 642 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 PEAR1Q5VY43 1037 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 COG3Q96JB2 828 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 PRKD2Q9BZL6 878 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 OSBPL5Q9H0X9 879 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 TRPV5Q9NQA5 729 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 AVENQ9NQS1 362 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CCDC9Q9Y3X0 531 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 PCDH15Q96QU1 1955 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 MTCL1Q9Y4B5 1905 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 ATP2A1O14983 1001 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 PAPSS1O43252 624 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 ZPR1O75312 459 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CXCL10P02778 98 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 IREB2P48200 963 aaKnown RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 RASSF7Q02833 373 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CCDC96Q2M329 555 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 TPTE2Q6XPS3 522 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 C11orf74Q86VG3 221 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CMASQ8NFW8 434 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CABLES1Q8TDN4 633 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 LPAR1Q92633 364 aa2.21□□□□□ -2.06
LINC00643-201ENST00000334389 CDX2Q99626 313 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 PRMT8Q9NR22 394 aaPredicted RBP2.21□□□□□ -2.06
LINC00643-201ENST00000334389 LZTS1Q9Y250 596 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms