RNA–Protein interactions for RNA: ENST00000324238.6

CRLF3-201, Transcript of cytokine receptor like factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CRLF3, Length 2,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRLF3-201ENST00000324238 CARD6Q9BX69 1037 aa22.86■■□□□ 1.25
CRLF3-201ENST00000324238 ANKRD18BA2A2Z9 1011 aa22.86■■□□□ 1.25
CRLF3-201ENST00000324238 SEC31AO94979 1220 aaKnown RBP22.86■■□□□ 1.25
CRLF3-201ENST00000324238 TOP1P11387 765 aaKnown RBP22.86■■□□□ 1.25
CRLF3-201ENST00000324238 CLCN6P51797 869 aa22.86■■□□□ 1.25
CRLF3-201ENST00000324238 ACSBG1Q96GR2 724 aa22.86■■□□□ 1.25
CRLF3-201ENST00000324238 BPIFA3Q9BQP9 254 aa22.86■■□□□ 1.25
CRLF3-201ENST00000324238 DESI2Q9BSY9 194 aa22.86■■□□□ 1.25
CRLF3-201ENST00000324238 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.86■■□□□ 1.25
CRLF3-201ENST00000324238 TRIM29Q14134 588 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 CCDC102BQ68D86 513 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 IGDCC4Q8TDY8 1250 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 SEC31BQ9NQW1 1179 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 COL18A1P39060 1754 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 FMR1Q06787 632 aaKnown RBP eCLIP22.85■■□□□ 1.25
CRLF3-201ENST00000324238 FBXL16Q8N461 479 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.85■■□□□ 1.25
CRLF3-201ENST00000324238 NUP133Q8WUM0 1156 aa22.85■■□□□ 1.25
CRLF3-201ENST00000324238 ETF1P62495 437 aaKnown RBP22.84■■□□□ 1.25
CRLF3-201ENST00000324238 NTRK3Q16288 839 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 GIGYF2Q6Y7W6 1299 aaKnown RBP22.84■■□□□ 1.25
CRLF3-201ENST00000324238 MAGEB6Q8N7X4 407 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 LY9Q9HBG7 655 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 HPSEQ9Y251 543 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 ADAMTSL3P82987 1691 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 POLR2DO15514 142 aaKnown RBP22.84■■□□□ 1.25
CRLF3-201ENST00000324238 MBD4O95243 580 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 CDK11BP21127 795 aaKnown RBP22.84■■□□□ 1.25
CRLF3-201ENST00000324238 OLFM4Q6UX06 510 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 MIGA1Q8NAN2 632 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 TUBE1Q9UJT0 475 aa22.84■■□□□ 1.25
CRLF3-201ENST00000324238 CPDO75976 1380 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 WTIPA6NIX2 430 aaPredicted RBP22.83■■□□□ 1.25
CRLF3-201ENST00000324238 CHMP4CQ96CF2 233 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 ZSWIM4Q9H7M6 989 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 EPB41L4AQ9HCS5 686 aaPredicted RBP22.83■■□□□ 1.25
CRLF3-201ENST00000324238 SLC12A7Q9Y666 1083 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 CTSWP56202 376 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 TRIM65Q6PJ69 517 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 KRBA2Q6ZNG9 492 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 L2HGDHQ9H9P8 463 aa22.83■■□□□ 1.25
CRLF3-201ENST00000324238 MAP3K15Q6ZN16 1313 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 FAM205CA6NFA0 338 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 TOB1P50616 345 aaPredicted RBP22.83■■□□□ 1.24
CRLF3-201ENST00000324238 TERF2Q15554 542 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 RESP18Q5W5W9 173 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 SMIM5Q71RC9 77 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 OXER1Q8TDS5 423 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 IRX2Q9BZI1 471 aaPredicted RBP22.83■■□□□ 1.24
CRLF3-201ENST00000324238 SERTAD1Q9UHV2 236 aa22.83■■□□□ 1.24
CRLF3-201ENST00000324238 KARSQ15046 597 aaKnown RBP22.82■■□□□ 1.24
CRLF3-201ENST00000324238 NKX1-1Q15270 411 aaPredicted RBP22.82■■□□□ 1.24
CRLF3-201ENST00000324238 CCDC93Q567U6 631 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 CPLX2Q6PUV4 134 aaKnown RBP22.82■■□□□ 1.24
CRLF3-201ENST00000324238 CPLX3Q8WVH0 158 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 WDR24Q96S15 920 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 COL5A2P05997 1499 aaPredicted RBP22.82■■□□□ 1.24
CRLF3-201ENST00000324238 PSDA5PKW4 1024 aaPredicted RBP22.82■■□□□ 1.24
CRLF3-201ENST00000324238 NRDCO43847 1150 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 CSF1RP07333 972 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 KLHL10Q6JEL2 608 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 TOGARAM2Q6ZUX3 1019 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 REXO1L1PQ8IX06 675 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 PCDHB6Q9Y5E3 794 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 KIF1AQ12756 1690 aa22.82■■□□□ 1.24
CRLF3-201ENST00000324238 KIF20AO95235 890 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 STX17P56962 302 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 MTF1Q14872 753 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 DZIP3Q86Y13 1208 aaKnown RBP22.81■■□□□ 1.24
CRLF3-201ENST00000324238 DIS3L2Q8IYB7 885 aaKnown RBP22.81■■□□□ 1.24
CRLF3-201ENST00000324238 STRBPQ96SI9 672 aaKnown RBP22.81■■□□□ 1.24
CRLF3-201ENST00000324238 NAPBQ9H115 298 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 SAMSN1Q9NSI8 373 aaKnown RBP22.81■■□□□ 1.24
CRLF3-201ENST00000324238 GLI3P10071 1580 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 GOLGB1Q14789 3259 aaKnown RBP22.81■■□□□ 1.24
CRLF3-201ENST00000324238 A0A0U1RQJ8 604 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 IKBKBO14920 756 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 POLR3GO15318 223 aaPredicted RBP22.81■■□□□ 1.24
CRLF3-201ENST00000324238 VSTM4Q8IW00 320 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 MNS1Q8NEH6 495 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 ATRIPQ8WXE1 791 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 NFE2L3Q9Y4A8 694 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 RIC1Q4ADV7 1423 aa22.81■■□□□ 1.24
CRLF3-201ENST00000324238 KCNQ4P56696 695 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 SSRP1Q08945 709 aaKnown RBP22.8■■□□□ 1.24
CRLF3-201ENST00000324238 UBXN4Q92575 508 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 STRCP1A6NGW2 1772 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 JMYQ8N9B5 988 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 STAMQ92783 540 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 TJP1Q07157 1748 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 GNG11P61952 73 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 IFNL3Q8IZI9 196 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 MAN1B1Q9UKM7 699 aa22.8■■□□□ 1.24
CRLF3-201ENST00000324238 KCPQ6ZWJ8 1503 aa22.79■■□□□ 1.24
CRLF3-201ENST00000324238 KIF2AO00139 706 aaPredicted RBP22.79■■□□□ 1.24
CRLF3-201ENST00000324238 PDE8BO95263 885 aa22.79■■□□□ 1.24
CRLF3-201ENST00000324238 CDKL5O76039 1030 aa22.79■■□□□ 1.24
CRLF3-201ENST00000324238 AFMP43652 599 aa22.79■■□□□ 1.24
CRLF3-201ENST00000324238 MYO5AQ9Y4I1 1855 aaKnown RBP22.78■■□□□ 1.24
CRLF3-201ENST00000324238 ZBTB22O15209 634 aa22.78■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms