RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SEC23IPQ9Y6Y8 1000 aaKnown RBP7.21□□□□□ -1.25
VPS35-201ENST00000299138 MYL1P05976 194 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 ACTN2P35609 894 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 PAFAH1B1P43034 410 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 KRT83P78385 493 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 EFCAB13Q8IY85 973 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 KBTBD3Q8NAB2 608 aa7.21□□□□□ -1.25
VPS35-201ENST00000299138 MAP3K19Q56UN5 1328 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 ZEB2O60315 1214 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 MAP7D1Q3KQU3 841 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 CKAP2LQ8IYA6 745 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 ABTB2Q8N961 1025 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 PANX2Q96RD6 677 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 GDPD2Q9HCC8 539 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 WDR17Q8IZU2 1322 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 ATP2B3Q16720 1220 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 ARHGAP27Q6ZUM4 889 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 B4GALNT4Q76KP1 1039 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 TMC6Q7Z403 805 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 P3H4Q92791 437 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 RNF41Q9H4P4 317 aaPredicted RBP7.21□□□□□ -1.26
VPS35-201ENST00000299138 TSKSQ9UJT2 592 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 FMNL3Q8IVF7 1028 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 CNPY4Q8N129 248 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 NCOA7Q8NI08 942 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 AGXT2Q9BYV1 514 aa7.21□□□□□ -1.26
VPS35-201ENST00000299138 ARHGAP25P42331 645 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 UBASH3AP57075 661 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 ME3Q16798 604 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 ABTB1Q969K4 478 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 SMIM23A6NLE4 172 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 SYKP43405 635 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 ATP11AP98196 1134 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 RRS1Q15050 365 aaKnown RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 ZNF365Q70YC5 407 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 ENOX1Q8TC92 643 aaKnown RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 SELENOSQ9BQE4 189 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 FRMD4BQ9Y2L6 1034 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 CEMIPQ8WUJ3 1361 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 PNMA6AP0CW24 399 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 ARL1P40616 181 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 COG7P83436 770 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 TTC5Q8N0Z6 440 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 STMN2Q93045 179 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 EPSTI1Q96J88 318 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 KIF20BQ96Q89 1820 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 A0A087WUV0 522 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 FAM237AA0A1B0GTK4 181 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 LACTBP83111 547 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 NMIQ13287 307 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 ZNF579Q8NAF0 562 aaKnown RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 NECTIN2Q92692 538 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 FAM53CQ9NYF3 392 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 ORC3Q9UBD5 711 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 PTPDC1A2A3K4 754 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 SMIM24O75264 130 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 GMNNO75496 209 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 ZC3H6P61129 1189 aaKnown RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 PRPF4BQ13523 1007 aaKnown RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 ZNF530Q6P9A1 599 aaPredicted RBP7.2□□□□□ -1.26
VPS35-201ENST00000299138 VPS37DQ86XT2 251 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 CPLX3Q8WVH0 158 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 NACAP1Q9BZK3 213 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 HAUS4Q9H6D7 363 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 TUBE1Q9UJT0 475 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 TMEM131LA2VDJ0 1609 aa7.2□□□□□ -1.26
VPS35-201ENST00000299138 STK36Q9NRP7 1315 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 GNG11P61952 73 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PPFIA1Q13136 1202 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 MYSM1Q5VVJ2 828 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 VSTM4Q8IW00 320 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 FBXO18Q8NFZ0 1043 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 IP6K1Q92551 441 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 MAGEF1Q9HAY2 307 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CDC23Q9UJX2 597 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 PNMA6EA0A0J9YXQ4 647 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 ANO9A1A5B4 782 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 TXNDC9O14530 226 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 MAP3K9P80192 1104 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 FANCCQ00597 558 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 SLC39A14Q15043 492 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 RIC3Q7Z5B4 369 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 RETREG2Q8NC44 543 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 BAG1Q99933 345 aaPredicted RBP7.19□□□□□ -1.26
VPS35-201ENST00000299138 SPG7Q9UQ90 795 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 TAF5LO75529 589 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CETN2P41208 172 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CLUL1Q15846 466 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 ZBTB41Q5SVQ8 909 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 CEP85LQ5SZL2 805 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 FERMT3Q86UX7 667 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 AOPEPQ8N6M6 819 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 MGEA5O60502 916 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 FGFR1OPO95684 399 aaKnown RBP7.19□□□□□ -1.26
VPS35-201ENST00000299138 DESP17661 470 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 EIF4A1P60842 406 aaKnown RBP7.19□□□□□ -1.26
VPS35-201ENST00000299138 SKOR1P84550 965 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 ZSCAN26Q16670 478 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 RASEFQ8IZ41 740 aa7.19□□□□□ -1.26
VPS35-201ENST00000299138 C3orf20Q8ND61 904 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms