RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 SETSIPP0DME0 302 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 HSP90AA4PQ58FG1 418 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 AKAP4Q5JQC9 854 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 NBPF11Q86T75 865 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 NUP58Q9BVL2 599 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 EMILIN1Q9Y6C2 1016 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 UAP1Q16222 522 aaPredicted RBP10.39□□□□□ -0.75
CUX1-201ENST00000292535 CASC4Q6P4E1 433 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 RUFY4Q6ZNE9 571 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 RIOK1Q9BRS2 568 aaKnown RBP10.39□□□□□ -0.75
CUX1-201ENST00000292535 SPC25Q9HBM1 224 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 TSHZ3Q63HK5 1081 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 TOPBP1Q92547 1522 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 DNM2P50570 870 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 PPP2R5BQ15173 497 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 KSR2Q6VAB6 950 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 IGSF22Q8N9C0 903 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 TFCP2L1Q9NZI6 479 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 PDE6BP35913 854 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 CYP26C1Q6V0L0 522 aa10.39□□□□□ -0.75
CUX1-201ENST00000292535 DDX55Q8NHQ9 600 aaKnown RBP eCLIP10.39□□□□□ -0.75
CUX1-201ENST00000292535 CCT6AP40227 531 aaKnown RBP10.39□□□□□ -0.75
CUX1-201ENST00000292535 BCRP11274 1271 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 TTC31Q49AM3 519 aaPredicted RBP10.38□□□□□ -0.75
CUX1-201ENST00000292535 GUCA1BQ9UMX6 200 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 PCDH11XQ9BZA7 1347 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 PCDH11YQ9BZA8 1340 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 PHLDB2Q86SQ0 1253 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 MAST3O60307 1309 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 DENND2AQ9ULE3 1009 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 CCNT1O60563 726 aaKnown RBP10.38□□□□□ -0.75
CUX1-201ENST00000292535 KRT9P35527 623 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 PUM3Q15397 648 aaKnown RBP10.38□□□□□ -0.75
CUX1-201ENST00000292535 CREB3L3Q68CJ9 461 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 AOPEPQ8N6M6 819 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 ZNF526Q8TF50 670 aaPredicted RBP10.38□□□□□ -0.75
CUX1-201ENST00000292535 PLCB1Q9NQ66 1216 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 SDK1Q7Z5N4 2213 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 SYNJ1O43426 1573 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 FAM83GA6ND36 823 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 IQSEC3Q9UPP2 1182 aaPredicted RBP10.38□□□□□ -0.75
CUX1-201ENST00000292535 AFG3L2Q9Y4W6 797 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 ZBTB21Q9ULJ3 1066 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 ASXL1Q8IXJ9 1541 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 CNBD1Q8NA66 436 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 SNX21Q969T3 373 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 UFL1O94874 794 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 KIF11P52732 1056 aa10.38□□□□□ -0.75
CUX1-201ENST00000292535 LZTS2Q9BRK4 669 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 PNMA2Q9UL42 364 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 KIAA0586Q9BVV6 1533 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 SOS1Q07889 1333 aaPredicted RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 DNM1Q05193 864 aaKnown RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 UTP14CQ5TAP6 766 aaKnown RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 C8orf74Q6P047 294 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 CARD10Q9BWT7 1032 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 ASIC2Q16515 512 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 ZNF365Q70YC5 407 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 HAUS1Q96CS2 278 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 DEXIO95424 95 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 ZNF131P52739 623 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 CC2D2AQ9P2K1 1620 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 PALM3A6NDB9 673 aaPredicted RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 OATP04181 439 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 TERF1P54274 439 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 GBP7Q8N8V2 638 aaPredicted RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 AFAP1L1Q8TED9 768 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 MIS12Q9H081 205 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 ZRANB1Q9UGI0 708 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 HARSP12081 509 aaKnown RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 FAM160A1Q05DH4 1040 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 TMEM87BQ96K49 555 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 APC2O95996 2303 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 ZEB2O60315 1214 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 PPFIA2O75334 1257 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 F13A1P00488 732 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 RAB3GAP1Q15042 981 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 NECAB1Q8N987 351 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 IFT81Q8WYA0 676 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 INTS4Q96HW7 963 aaKnown RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 DACT1Q9NYF0 836 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 ARHGEF35A5YM69 484 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 PPP2R5EQ16537 467 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 DNAJC25Q9H1X3 360 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 PCK1P35558 622 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 NOC4LQ9BVI4 516 aaKnown RBP10.37□□□□□ -0.75
CUX1-201ENST00000292535 WDR7Q9Y4E6 1490 aa10.37□□□□□ -0.75
CUX1-201ENST00000292535 NOLC1Q14978 699 aaKnown RBP eCLIP10.36□□□□□ -0.757e-6■■■□□ 16.5
CUX1-201ENST00000292535 PLCH2O75038 1416 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 A0A1B0GUA9 196 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 CCDC169A6NNP5 214 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 NR1I2O75469 434 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 TRAPPC3LQ5T215 181 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 SP4Q02446 784 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 C8orf37Q96NL8 207 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 BAG1Q99933 345 aaPredicted RBP10.36□□□□□ -0.75
CUX1-201ENST00000292535 RASSF2P50749 326 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 DENND2CQ68D51 928 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 MICALL1Q8N3F8 863 aa10.36□□□□□ -0.75
CUX1-201ENST00000292535 NOS1P29475 1434 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms