RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TCRBV5S4A2TA0A5A2 114 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 FAM98CQ17RN3 349 aaKnown RBP19.22■□□□□ 0.67
VPS54-201ENST00000272322 LONRF3Q496Y0 759 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 ERFEQ4G0M1 354 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 UBAC1Q9BSL1 405 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 NAT10Q9H0A0 1025 aaKnown RBP19.22■□□□□ 0.67
VPS54-201ENST00000272322 ZMYM6O95789 1325 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 PPP4R3BQ5MIZ7 849 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 AKNAD1Q5T1N1 836 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 TRMT44Q8IYL2 757 aaKnown RBP19.22■□□□□ 0.67
VPS54-201ENST00000272322 CABP5Q9NP86 173 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 VPS54Q9P1Q0 977 aa19.22■□□□□ 0.67
VPS54-201ENST00000272322 NMT2O60551 498 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 SERPINC1P01008 464 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 CCDC152Q4G0S7 254 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 CNNM3Q8NE01 707 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 ADAMTS7Q9UKP4 1686 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 EIF5P55010 431 aaKnown RBP19.21■□□□□ 0.67
VPS54-201ENST00000272322 RTN1Q16799 776 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 POLR3EQ9NVU0 708 aa19.21■□□□□ 0.67
VPS54-201ENST00000272322 CFAP100Q494V2 611 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 KLHL10Q6JEL2 608 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 NACAP1Q9BZK3 213 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 FAM47AQ5JRC9 791 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 DPF2Q92785 391 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 PRIMPOLQ96LW4 560 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 SRP68Q9UHB9 627 aaKnown RBP19.2■□□□□ 0.66
VPS54-201ENST00000272322 CDHR2Q9BYE9 1310 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 TPM3P06753 285 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 CELF1Q92879 486 aaKnown RBP19.2■□□□□ 0.66
VPS54-201ENST00000272322 FBXO3Q9UK99 471 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 PCDHB6Q9Y5E3 794 aa19.2■□□□□ 0.66
VPS54-201ENST00000272322 U2AF2P26368 475 aaKnown RBP eCLIP19.19■□□□□ 0.662e-9■■□□□ 11.8
VPS54-201ENST00000272322 AFMP43652 599 aa19.19■□□□□ 0.66
VPS54-201ENST00000272322 SLC39A14Q15043 492 aa19.19■□□□□ 0.66
VPS54-201ENST00000272322 NOM1Q5C9Z4 860 aaKnown RBP19.19■□□□□ 0.66
VPS54-201ENST00000272322 BRAPQ7Z569 592 aa19.19■□□□□ 0.66
VPS54-201ENST00000272322 POLR2DO15514 142 aaKnown RBP19.19■□□□□ 0.66
VPS54-201ENST00000272322 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.19■□□□□ 0.66
VPS54-201ENST00000272322 CDKL5O76039 1030 aa19.19■□□□□ 0.66
VPS54-201ENST00000272322 FGFR2P21802 821 aa19.19■□□□□ 0.66
VPS54-201ENST00000272322 BCL9O00512 1426 aa19.19■□□□□ 0.66
VPS54-201ENST00000272322 YEATS4O95619 227 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 ARID4AP29374 1257 aaPredicted RBP19.18■□□□□ 0.66
VPS54-201ENST00000272322 TERF1P54274 439 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 EVCP57679 992 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 SAFBQ15424 915 aaKnown RBP eCLIP19.18■□□□□ 0.66
VPS54-201ENST00000272322 NTRK3Q16288 839 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 ZMYND15Q9H091 742 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 PCDHA5Q9Y5H7 936 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 MROH5Q6ZUA9 1318 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 TNS2Q63HR2 1409 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 FOXP4Q8IVH2 680 aaPredicted RBP19.18■□□□□ 0.66
VPS54-201ENST00000272322 TRIM22Q8IYM9 498 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 GPR101Q96P66 508 aaPredicted RBP19.18■□□□□ 0.66
VPS54-201ENST00000272322 AATFQ9NY61 560 aaKnown RBP eCLIP19.18■□□□□ 0.66
VPS54-201ENST00000272322 V9GY48 417 aaPredicted RBP19.18■□□□□ 0.66
VPS54-201ENST00000272322 GLI3P10071 1580 aa19.18■□□□□ 0.66
VPS54-201ENST00000272322 SART3Q15020 963 aaKnown RBP19.17■□□□□ 0.66
VPS54-201ENST00000272322 PTPN14Q15678 1187 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 CEP135Q66GS9 1140 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 CCDC112Q8NEF3 446 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 KCNH3Q9ULD8 1083 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 CAMTA2O94983 1202 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 STX17P56962 302 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 AKAP17AQ02040 695 aaKnown RBP19.17■□□□□ 0.66
VPS54-201ENST00000272322 UTRNP46939 3433 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 FANCLQ9NW38 375 aa19.17■□□□□ 0.66
VPS54-201ENST00000272322 TMEM232C9JQI7 657 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 CMA1P23946 247 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 PPARAQ07869 468 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 NBPF11Q86T75 865 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 HOMER1Q86YM7 354 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 DNAJC5Q9H3Z4 198 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 MAGEB6P1A0A0J9YX57 407 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 CDK11BP21127 795 aaKnown RBP19.16■□□□□ 0.66
VPS54-201ENST00000272322 TMEM87BQ96K49 555 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 TNKSO95271 1327 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 USP17L12C9JPN9 530 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 USP17L21D6R901 530 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 ANKRD18AQ8IVF6 992 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 PDCL2Q8N4E4 241 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 LAMA4Q16363 1823 aa19.16■□□□□ 0.66
VPS54-201ENST00000272322 PLEKHA8P1O95397 391 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 PRR29P0C7W0 189 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 CYP2D6P10635 497 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 ZNF654Q8IZM8 581 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 A0A1W2PQ27 194 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 A0A1W2PQ64 194 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 A0A1W2PQD8 194 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 ERVV-1B6SEH8 477 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 UBASH3AP57075 661 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 FANCCQ00597 558 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 SMYD4Q8IYR2 804 aaPredicted RBP19.15■□□□□ 0.66
VPS54-201ENST00000272322 SERTAD1Q9UHV2 236 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 MYO5AQ9Y4I1 1855 aaKnown RBP19.15■□□□□ 0.66
VPS54-201ENST00000272322 VEGFAP15692 232 aaPredicted RBP19.15■□□□□ 0.66
VPS54-201ENST00000272322 CDC25AP30304 524 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 PDE4BQ07343 736 aa19.15■□□□□ 0.66
VPS54-201ENST00000272322 NOSTRINQ8IVI9 506 aa19.15■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms