RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 BRI3BPQ8WY22 251 aa19.71■□□□□ 0.75
USE1-201ENST00000263897 DDX4Q9NQI0 724 aaKnown RBP19.71■□□□□ 0.75
USE1-201ENST00000263897 RFX7Q2KHR2 1363 aa19.7■□□□□ 0.74
USE1-201ENST00000263897 CCL15-CCL14A0A0B4J2E2 113 aa19.7■□□□□ 0.74
USE1-201ENST00000263897 NPM3O75607 178 aaKnown RBP19.7■□□□□ 0.74
USE1-201ENST00000263897 CYP2E1P05181 493 aaPredicted RBP19.7■□□□□ 0.74
USE1-201ENST00000263897 PDE3AQ14432 1141 aa19.7■□□□□ 0.74
USE1-201ENST00000263897 CCL15Q16663 113 aa19.7■□□□□ 0.74
USE1-201ENST00000263897 SIRT2Q8IXJ6 389 aa19.7■□□□□ 0.74
USE1-201ENST00000263897 TLR7Q9NYK1 1049 aaKnown RBP19.7■□□□□ 0.74
USE1-201ENST00000263897 DDTLA6NHG4 134 aaPredicted RBP19.69■□□□□ 0.74
USE1-201ENST00000263897 IRF6O14896 467 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 HMMRO75330 724 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 ZAP70P43403 619 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 MAP3K10Q02779 954 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 PPATQ06203 517 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 PPIL2Q13356 520 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 PICALMQ13492 652 aa19.69■□□□□ 0.74
USE1-201ENST00000263897 PKN2Q16513 984 aaKnown RBP19.69■□□□□ 0.74
USE1-201ENST00000263897 ZSCAN29Q8IWY8 852 aaPredicted RBP19.69■□□□□ 0.74
USE1-201ENST00000263897 IGSF3O75054 1194 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 CETPP11597 493 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 CRHR2Q13324 411 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 SNAPC2Q13487 334 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 C20orf194Q5TEA3 1177 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.68■□□□□ 0.74
USE1-201ENST00000263897 RHPN1Q8TCX5 695 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 ATRNL1Q5VV63 1379 aa19.68■□□□□ 0.74
USE1-201ENST00000263897 PHF20L1A8MW92 1017 aa19.67■□□□□ 0.74
USE1-201ENST00000263897 NOL9Q5SY16 702 aaKnown RBP19.67■□□□□ 0.74
USE1-201ENST00000263897 NAA16Q6N069 864 aaPredicted RBP19.67■□□□□ 0.74
USE1-201ENST00000263897 AACSQ86V21 672 aa19.67■□□□□ 0.74
USE1-201ENST00000263897 PPP4CP60510 307 aa19.66■□□□□ 0.74
USE1-201ENST00000263897 FAM43AQ8N2R8 423 aa19.66■□□□□ 0.74
USE1-201ENST00000263897 NOL10Q9BSC4 688 aaKnown RBP19.66■□□□□ 0.74
USE1-201ENST00000263897 IL1RAPL2Q9NP60 686 aa19.66■□□□□ 0.74
USE1-201ENST00000263897 PIH1D3Q9NQM4 214 aaKnown RBP19.66■□□□□ 0.74
USE1-201ENST00000263897 MYO5AQ9Y4I1 1855 aaKnown RBP19.65■□□□□ 0.74
USE1-201ENST00000263897 BAG3O95817 575 aa19.65■□□□□ 0.74
USE1-201ENST00000263897 TAF1CQ15572 869 aaPredicted RBP19.65■□□□□ 0.74
USE1-201ENST00000263897 KIF1BPQ96EK5 621 aa19.65■□□□□ 0.74
USE1-201ENST00000263897 ZFYVE28Q9HCC9 887 aa19.65■□□□□ 0.74
USE1-201ENST00000263897 KCNH4Q9UQ05 1017 aa19.65■□□□□ 0.74
USE1-201ENST00000263897 TBC1D12O60347 775 aa19.64■□□□□ 0.73
USE1-201ENST00000263897 RAB11FIP3O75154 756 aa19.64■□□□□ 0.73
USE1-201ENST00000263897 TEX11Q8IYF3 940 aa19.64■□□□□ 0.73
USE1-201ENST00000263897 CLASRPQ8N2M8 674 aaKnown RBP19.64■□□□□ 0.73
USE1-201ENST00000263897 SH3RF3Q8TEJ3 882 aaPredicted RBP19.64■□□□□ 0.73
USE1-201ENST00000263897 ZCCHC17Q9NP64 241 aaKnown RBP19.64■□□□□ 0.73
USE1-201ENST00000263897 DOCK2Q92608 1830 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 BTBD19C9JJ37 291 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 APBB1O00213 710 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 CTNND1O60716 968 aaKnown RBP19.63■□□□□ 0.73
USE1-201ENST00000263897 SLURP2P0DP57 97 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 PLCG2P16885 1265 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 RGS19P49795 217 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 SP3Q02447 781 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 ADGRA1Q86SQ6 560 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 SCYL3Q8IZE3 742 aa19.63■□□□□ 0.73
USE1-201ENST00000263897 OSBPL5Q9H0X9 879 aaPredicted RBP19.63■□□□□ 0.73
USE1-201ENST00000263897 AATFQ9NY61 560 aaKnown RBP eCLIP19.63■□□□□ 0.73
USE1-201ENST00000263897 CXCL11O14625 94 aa19.62■□□□□ 0.73
USE1-201ENST00000263897 FBXO46Q6PJ61 603 aaPredicted RBP19.62■□□□□ 0.73
USE1-201ENST00000263897 ERO1AQ96HE7 468 aa19.62■□□□□ 0.73
USE1-201ENST00000263897 HPS5Q9UPZ3 1129 aa19.62■□□□□ 0.73
USE1-201ENST00000263897 NDUFB9Q9Y6M9 179 aa19.62■□□□□ 0.73
USE1-201ENST00000263897 IDH1O75874 414 aaKnown RBP19.61■□□□□ 0.73
USE1-201ENST00000263897 PTPRAP18433 802 aa19.61■□□□□ 0.73
USE1-201ENST00000263897 CYP7A1P22680 504 aa19.61■□□□□ 0.73
USE1-201ENST00000263897 ANTXR1Q9H6X2 564 aa19.61■□□□□ 0.73
USE1-201ENST00000263897 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.61■□□□□ 0.73
USE1-201ENST00000263897 PICK1Q9NRD5 415 aa19.61■□□□□ 0.73
USE1-201ENST00000263897 ZHX2Q9Y6X8 837 aa19.61■□□□□ 0.73
USE1-201ENST00000263897 COL2A1P02458 1487 aaPredicted RBP19.6■□□□□ 0.73
USE1-201ENST00000263897 IFIT2P09913 472 aaKnown RBP19.6■□□□□ 0.73
USE1-201ENST00000263897 OTOP1Q7RTM1 612 aa19.6■□□□□ 0.73
USE1-201ENST00000263897 ANKRD23Q86SG2 305 aa19.6■□□□□ 0.73
USE1-201ENST00000263897 CD99L2Q8TCZ2 262 aa19.6■□□□□ 0.73
USE1-201ENST00000263897 TRIM17Q9Y577 477 aa19.6■□□□□ 0.73
USE1-201ENST00000263897 TLR2O60603 784 aa19.59■□□□□ 0.73
USE1-201ENST00000263897 MAP3K12Q12852 859 aa19.59■□□□□ 0.73
USE1-201ENST00000263897 MOGSQ13724 837 aa19.59■□□□□ 0.73
USE1-201ENST00000263897 TMED8Q6PL24 325 aaPredicted RBP19.59■□□□□ 0.73
USE1-201ENST00000263897 TGFBRAP1Q8WUH2 860 aa19.59■□□□□ 0.73
USE1-201ENST00000263897 DHX36Q9H2U1 1008 aaKnown RBP19.59■□□□□ 0.73
USE1-201ENST00000263897 PI4KBQ9UBF8 816 aa19.59■□□□□ 0.73
USE1-201ENST00000263897 AFG3L2Q9Y4W6 797 aa19.59■□□□□ 0.73
USE1-201ENST00000263897 MAST2Q6P0Q8 1798 aa19.58■□□□□ 0.73
USE1-201ENST00000263897 FAM196BA6NMK8 535 aa19.58■□□□□ 0.72
USE1-201ENST00000263897 DYNLL1P63167 89 aaKnown RBP19.58■□□□□ 0.72
USE1-201ENST00000263897 MAPKAPK5Q8IW41 473 aa19.58■□□□□ 0.72
USE1-201ENST00000263897 MAGEB6Q8N7X4 407 aa19.58■□□□□ 0.72
USE1-201ENST00000263897 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.58■□□□□ 0.72
USE1-201ENST00000263897 PDHXO00330 501 aa19.57■□□□□ 0.72
USE1-201ENST00000263897 CAP1Q01518 475 aa19.57■□□□□ 0.72
USE1-201ENST00000263897 TTF1Q15361 905 aaPredicted RBP19.57■□□□□ 0.72
USE1-201ENST00000263897 FOXP4Q8IVH2 680 aaPredicted RBP19.57■□□□□ 0.72
USE1-201ENST00000263897 BCL11AQ9H165 835 aa19.57■□□□□ 0.72
USE1-201ENST00000263897 EFCC1Q9HA90 598 aa19.57■□□□□ 0.72
USE1-201ENST00000263897 HERC5Q9UII4 1024 aaKnown RBP19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms