RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 CNBD1Q8NA66 436 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 SDR42E1Q8WUS8 393 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 FTOQ9C0B1 505 aaKnown RBP eCLIP15.07■□□□□ 0
SPTLC1-201ENST00000262554 RTEL1Q9NZ71 1219 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 ANAPC4Q9UJX5 808 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 MAST2Q6P0Q8 1798 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 UBR3Q6ZT12 1888 aa15.07■□□□□ 0
SPTLC1-201ENST00000262554 MINDY4BA8MYZ0 360 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 RXRAP19793 462 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 KLRK1P26718 216 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 CDC27P30260 824 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 IARSP41252 1262 aaKnown RBP15.06■□□□□ 0
SPTLC1-201ENST00000262554 NFIXQ14938 502 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 WTAPQ15007 396 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 ALG1Q9BT22 464 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 BRIP1Q9BX63 1249 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 TFCP2L1Q9NZI6 479 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 NID2Q14112 1375 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 BAZ2AQ9UIF9 1905 aaKnown RBP15.06■□□□□ 0
SPTLC1-201ENST00000262554 ME1P48163 572 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 GRAPQ13588 217 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 TMED8Q6PL24 325 aaPredicted RBP15.06■□□□□ 0
SPTLC1-201ENST00000262554 CCDC73Q6ZRK6 1079 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 RBM43Q6ZSC3 357 aaKnown RBP15.06■□□□□ 0
SPTLC1-201ENST00000262554 CCAR1Q8IX12 1150 aaKnown RBP15.06■□□□□ 0
SPTLC1-201ENST00000262554 CCDC144CPQ8IYA2 1237 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 GRAPLQ8TC17 118 aaPredicted RBP15.06■□□□□ 0
SPTLC1-201ENST00000262554 CCDC39Q9UFE4 941 aa15.06■□□□□ 0
SPTLC1-201ENST00000262554 SPDYE2BA6NHP3 402 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 SPDYE6P0CI01 402 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 DYNLL1P63167 89 aaKnown RBP15.05■□□□□ -0
SPTLC1-201ENST00000262554 TYRO3Q06418 890 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 SPDYE2Q495Y8 402 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 CKAP2LQ8IYA6 745 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 ESR2Q92731 530 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 NSUN4Q96CB9 384 aaKnown RBP15.05■□□□□ -0
SPTLC1-201ENST00000262554 UBAC1Q9BSL1 405 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 MYL10Q9BUA6 226 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 LRRC4BQ9NT99 713 aa15.05■□□□□ -0
SPTLC1-201ENST00000262554 STK36Q9NRP7 1315 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.04■□□□□ -0
SPTLC1-201ENST00000262554 YEATS4O95619 227 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 POLR3DP05423 398 aaPredicted RBP15.04■□□□□ -0
SPTLC1-201ENST00000262554 MSNP26038 577 aaKnown RBP15.04■□□□□ -0
SPTLC1-201ENST00000262554 KIF23Q02241 960 aaPredicted RBP15.04■□□□□ -0
SPTLC1-201ENST00000262554 MECOMQ03112 1051 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 SSRP1Q08945 709 aaKnown RBP15.04■□□□□ -0
SPTLC1-201ENST00000262554 TRIM29Q14134 588 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 NTRK3Q16288 839 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 MYSM1Q5VVJ2 828 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 STK11IPQ8N1F8 1099 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 WASF1Q92558 559 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 PHKBQ93100 1093 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 ZKSCAN3Q9BRR0 538 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 FAM217BQ9NTX9 383 aaPredicted RBP15.04■□□□□ -0
SPTLC1-201ENST00000262554 POLR3EQ9NVU0 708 aa15.04■□□□□ -0
SPTLC1-201ENST00000262554 CTAGE5O15320 804 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 PCP11498 1178 aaKnown RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 RCAN1P53805 252 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 CHAF1AQ13111 956 aaPredicted RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 STK38Q15208 465 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 SPTY2D1Q68D10 685 aaPredicted RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 SASS6Q6UVJ0 657 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 KCNG4Q8TDN1 519 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 ZNF384Q8TF68 577 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 GJB4Q9NTQ9 266 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 ANKIB1Q9P2G1 1089 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 USP25Q9UHP3 1055 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 LEMD3Q9Y2U8 911 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 MYH2Q9UKX2 1941 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 CCDC196A0A1B0GTZ2 297 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 PTMAP06454 111 aaKnown RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 SF3A1Q15459 793 aaKnown RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 RTN1Q16799 776 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 SLC27A3Q5K4L6 730 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 KRT40Q6A162 431 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 LINC00301Q8NCQ3 95 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 FAM200AQ8TCP9 573 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 CRNKL1Q9BZJ0 848 aaKnown RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 QTRT2Q9H974 415 aaKnown RBP15.03■□□□□ -0
SPTLC1-201ENST00000262554 KIAA1551Q9HCM1 1747 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 DUOX1Q9NRD9 1551 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 MRVI1Q9Y6F6 885 aa15.03■□□□□ -0
SPTLC1-201ENST00000262554 LAMB1P07942 1786 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 KIF28PB7ZC32 967 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 RANBP6O60518 1105 aaKnown RBP15.02■□□□□ -0
SPTLC1-201ENST00000262554 FMNL1O95466 1100 aaPredicted RBP15.02■□□□□ -0
SPTLC1-201ENST00000262554 IFNAR1P17181 557 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 FAM160A1Q05DH4 1040 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 GNL2Q13823 731 aaKnown RBP15.02■□□□□ -0
SPTLC1-201ENST00000262554 ADALQ6DHV7 355 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 TRIM22Q8IYM9 498 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 FSIP1Q8NA03 581 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 RPGRQ92834 1020 aaKnown RBP15.02■□□□□ -0
SPTLC1-201ENST00000262554 AIFM3Q96NN9 605 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 SLC26A6Q9BXS9 759 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 NOL7Q9UMY1 257 aaKnown RBP15.02■□□□□ -0
SPTLC1-201ENST00000262554 PCDHA7Q9UN72 937 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 CLIC4Q9Y696 253 aa15.02■□□□□ -0
SPTLC1-201ENST00000262554 IRS2Q9Y4H2 1338 aa15.02□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms