RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 MYO5AQ9Y4I1 1855 aaKnown RBP24.6■■□□□ 1.53
TRIM28-201ENST00000253024 KIF1AQ12756 1690 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 STRCP1A6NGW2 1772 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 CTIFO43310 598 aaKnown RBP24.6■■□□□ 1.53
TRIM28-201ENST00000253024 UBASH3AP57075 661 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 EVCP57679 992 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 PCDHA5Q9Y5H7 936 aa24.6■■□□□ 1.53
TRIM28-201ENST00000253024 CAVIN2O95810 425 aa24.59■■□□□ 1.53
TRIM28-201ENST00000253024 PRR29P0C7W0 189 aa24.59■■□□□ 1.53
TRIM28-201ENST00000253024 CMA1P23946 247 aa24.59■■□□□ 1.53
TRIM28-201ENST00000253024 KLHL10Q6JEL2 608 aa24.59■■□□□ 1.53
TRIM28-201ENST00000253024 DIS3L2Q8IYB7 885 aaKnown RBP24.59■■□□□ 1.53
TRIM28-201ENST00000253024 PPIL4Q8WUA2 492 aaKnown RBP eCLIP24.59■■□□□ 1.53
TRIM28-201ENST00000253024 PDE8AO60658 829 aa24.58■■□□□ 1.53
TRIM28-201ENST00000253024 CDC25BP30305 580 aa24.58■■□□□ 1.53
TRIM28-201ENST00000253024 SSRP1Q08945 709 aaKnown RBP24.58■■□□□ 1.53
TRIM28-201ENST00000253024 MFSD6Q6ZSS7 791 aa24.58■■□□□ 1.53
TRIM28-201ENST00000253024 ANKRD7Q92527 254 aa24.58■■□□□ 1.53
TRIM28-201ENST00000253024 METTL16Q86W50 562 aaKnown RBP24.58■■□□□ 1.53
TRIM28-201ENST00000253024 UTP14AQ9BVJ6 771 aaKnown RBP24.58■■□□□ 1.53
TRIM28-201ENST00000253024 POLR2DO15514 142 aaKnown RBP24.57■■□□□ 1.52
TRIM28-201ENST00000253024 GYG1P46976 350 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 GNL3Q9BVP2 549 aaKnown RBP eCLIP24.57■■□□□ 1.52
TRIM28-201ENST00000253024 KCNH3Q9ULD8 1083 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 PCDHB6Q9Y5E3 794 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 PUM3Q15397 648 aaKnown RBP24.57■■□□□ 1.52
TRIM28-201ENST00000253024 ATL3Q6DD88 541 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 MAP3K12Q12852 859 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 ADGRA1Q86SQ6 560 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 RAI14Q9P0K7 980 aa24.57■■□□□ 1.52
TRIM28-201ENST00000253024 TCRBV5S4A2TA0A5A2 114 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 AFMP43652 599 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 STX17P56962 302 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 NTRK3Q16288 839 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 PPP1R13BQ96KQ4 1090 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 EPC1Q9H2F5 836 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 CABP5Q9NP86 173 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 ADAMTSL3P82987 1691 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 GSG1L2A8MUP6 293 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 ERCC6LQ2NKX8 1250 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 NOM1Q5C9Z4 860 aaKnown RBP24.56■■□□□ 1.52
TRIM28-201ENST00000253024 DNAI1Q9UI46 699 aa24.56■■□□□ 1.52
TRIM28-201ENST00000253024 TRIM28Q13263 835 aaKnown RBP24.55■■□□□ 1.52
TRIM28-201ENST00000253024 PTPAQ15257 358 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 TTF1Q15361 905 aaPredicted RBP24.55■■□□□ 1.52
TRIM28-201ENST00000253024 ST7Q9NRC1 585 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 VPS54Q9P1Q0 977 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 BMP6P22004 513 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 TPM4P67936 248 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 LPIN2Q92539 896 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 HSD3B7Q9H2F3 369 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 PAXBP1Q9Y5B6 917 aa24.55■■□□□ 1.52
TRIM28-201ENST00000253024 CDK11BP21127 795 aaKnown RBP24.54■■□□□ 1.52
TRIM28-201ENST00000253024 KIF18AQ8NI77 898 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 SERTAD1Q9UHV2 236 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 SLC5A1P13866 664 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 ZSCAN20P17040 1043 aaPredicted RBP24.54■■□□□ 1.52
TRIM28-201ENST00000253024 ADKP55263 362 aaKnown RBP24.54■■□□□ 1.52
TRIM28-201ENST00000253024 RBM6P78332 1123 aaKnown RBP24.54■■□□□ 1.52
TRIM28-201ENST00000253024 UBE3CQ15386 1083 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 SMYD4Q8IYR2 804 aaPredicted RBP24.54■■□□□ 1.52
TRIM28-201ENST00000253024 CYP7A1P22680 504 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 ATP6V1AP38606 617 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 WTAPQ15007 396 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 NYAP1Q6ZVC0 841 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 CPLX3Q8WVH0 158 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 MAP3K14Q99558 947 aa24.54■■□□□ 1.52
TRIM28-201ENST00000253024 NIP7Q9Y221 180 aaKnown RBP eCLIP24.54■■□□□ 1.52
TRIM28-201ENST00000253024 PATL2C9JE40 543 aaKnown RBP24.53■■□□□ 1.52
TRIM28-201ENST00000253024 EXOC5O00471 708 aa24.53■■□□□ 1.52
TRIM28-201ENST00000253024 CDKL5O76039 1030 aa24.53■■□□□ 1.52
TRIM28-201ENST00000253024 TOB1P50616 345 aaPredicted RBP24.53■■□□□ 1.52
TRIM28-201ENST00000253024 DYNLL1P63167 89 aaKnown RBP24.53■■□□□ 1.52
TRIM28-201ENST00000253024 RTN1Q16799 776 aa24.53■■□□□ 1.52
TRIM28-201ENST00000253024 AKNAD1Q5T1N1 836 aa24.53■■□□□ 1.52
TRIM28-201ENST00000253024 KMT5BQ4FZB7 885 aa24.52■■□□□ 1.52
TRIM28-201ENST00000253024 PLA2G12BQ9BX93 195 aa24.52■■□□□ 1.52
TRIM28-201ENST00000253024 OLFM4Q6UX06 510 aa24.52■■□□□ 1.52
TRIM28-201ENST00000253024 FMR1Q06787 632 aaKnown RBP eCLIP24.51■■□□□ 1.511e-10■■■□□ 18.1
TRIM28-201ENST00000253024 TEX13AQ9BXU3 409 aaPredicted RBP24.51■■□□□ 1.51
TRIM28-201ENST00000253024 FBXO38Q6PIJ6 1188 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 SLC51AQ86UW1 340 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 NOSTRINQ8IVI9 506 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 DESI2Q9BSY9 194 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 PKD1L3Q7Z443 1732 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 EARS2Q5JPH6 523 aaKnown RBP24.51■■□□□ 1.51
TRIM28-201ENST00000253024 DHX58Q96C10 678 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 PRDM4Q9UKN5 801 aa24.51■■□□□ 1.51
TRIM28-201ENST00000253024 SOS2Q07890 1332 aaPredicted RBP24.5■■□□□ 1.51
TRIM28-201ENST00000253024 ERICH2A1L162 156 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 NMT2O60551 498 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 MYL5Q02045 173 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 NUP188Q5SRE5 1749 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 WNT7AO00755 349 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 SAFBQ15424 915 aaKnown RBP eCLIP24.5■■□□□ 1.51
TRIM28-201ENST00000253024 KRBA2Q6ZNG9 492 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 JMYQ8N9B5 988 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 UBAC1Q9BSL1 405 aa24.5■■□□□ 1.51
TRIM28-201ENST00000253024 TOP1P11387 765 aaKnown RBP24.49■■□□□ 1.51
TRIM28-201ENST00000253024 GSDMDP57764 484 aa24.49■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms