RNA–Protein interactions for RNA: ENST00000245479.2

SOX9-201, Transcript of SRY-box 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SOX9, Length 3,935 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9-201ENST00000245479 ATP1A3P13637 1013 aa13.15□□□□□ -0.3
SOX9-201ENST00000245479 PPARDQ03181 441 aa13.15□□□□□ -0.3
SOX9-201ENST00000245479 SSRP1Q08945 709 aaKnown RBP13.15□□□□□ -0.3
SOX9-201ENST00000245479 DDB1Q16531 1140 aa13.15□□□□□ -0.3
SOX9-201ENST00000245479 KRT40Q6A162 431 aa13.15□□□□□ -0.3
SOX9-201ENST00000245479 VPS54Q9P1Q0 977 aa13.15□□□□□ -0.3
SOX9-201ENST00000245479 ZNF202O95125 648 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 USP5P45974 858 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 CLCN6P51797 869 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 ETF1P62495 437 aaKnown RBP13.14□□□□□ -0.31
SOX9-201ENST00000245479 LONRF3Q496Y0 759 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 TDRD7Q8NHU6 1098 aaKnown RBP13.14□□□□□ -0.31
SOX9-201ENST00000245479 RICTORQ6R327 1708 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 USP27XA6NNY8 438 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 RFX5P48382 616 aaPredicted RBP13.14□□□□□ -0.31
SOX9-201ENST00000245479 FAM160A1Q05DH4 1040 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 WTAPQ15007 396 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 ZNF174Q15697 407 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 ENOX2Q16206 610 aaKnown RBP13.14□□□□□ -0.31
SOX9-201ENST00000245479 APPBP2Q92624 585 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 MRFAP1L1Q96HT8 127 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 XPO4Q9C0E2 1151 aaKnown RBP13.14□□□□□ -0.31
SOX9-201ENST00000245479 DNA2P51530 1060 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 ZMYM1Q5SVZ6 1142 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 RNF187Q5TA31 235 aaPredicted RBP13.14□□□□□ -0.31
SOX9-201ENST00000245479 NBPF11Q86T75 865 aa13.14□□□□□ -0.31
SOX9-201ENST00000245479 NPHP4O75161 1426 aaPredicted RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 PDE6AP16499 860 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 SMYD4Q8IYR2 804 aaPredicted RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 AATFQ9NY61 560 aaKnown RBP eCLIP13.13□□□□□ -0.31
SOX9-201ENST00000245479 DIP2AQ14689 1571 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 ADGRL3Q9HAR2 1447 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 CTAGE15A4D2H0 777 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 FOXN1O15353 648 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 CTAGE8P0CG41 777 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 PNMA6AP0CW24 399 aaPredicted RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 EIF6P56537 245 aaKnown RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 DYNLL1P63167 89 aaKnown RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 RESTQ13127 1097 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 CTAGE6Q86UF2 777 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 CTAGE4Q8IX94 777 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 V9GY48 417 aaPredicted RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 H7C1W4 665 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 POLR2DO15514 142 aaKnown RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 HDXQ7Z353 690 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 HELLSQ9NRZ9 838 aa13.13□□□□□ -0.31
SOX9-201ENST00000245479 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.13□□□□□ -0.31
SOX9-201ENST00000245479 DIP2BQ9P265 1576 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 CTDNEP1O95476 244 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 RAD51AP2Q09MP3 1159 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 CCDC181Q5TID7 509 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 TBC1D10CQ8IV04 446 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 SAP30BPQ9UHR5 308 aaKnown RBP13.12□□□□□ -0.31
SOX9-201ENST00000245479 ELP1O95163 1332 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 KIF20BQ96Q89 1820 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 SLFN14P0C7P3 912 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 CT47A1Q5JQC4 288 aaPredicted RBP13.12□□□□□ -0.31
SOX9-201ENST00000245479 CYB5R4Q7L1T6 521 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 TMEM87AQ8NBN3 555 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 TTLL11Q8NHH1 800 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 TMEM51Q9NW97 253 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 IMPACTQ9P2X3 320 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 DLG5Q8TDM6 1919 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 KIF28PB7ZC32 967 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 EBAG9O00559 213 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 CTIFO43310 598 aaKnown RBP13.12□□□□□ -0.31
SOX9-201ENST00000245479 PFKFB2O60825 505 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 MYSM1Q5VVJ2 828 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 ANO1Q5XXA6 986 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 KIAA1328Q86T90 577 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 CPVLQ9H3G5 476 aa13.12□□□□□ -0.31
SOX9-201ENST00000245479 ZNHIT6Q9NWK9 470 aaKnown RBP13.12□□□□□ -0.31
SOX9-201ENST00000245479 ANGEL1Q9UNK9 670 aaKnown RBP13.12□□□□□ -0.31
SOX9-201ENST00000245479 SSH2Q76I76 1423 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 RTN1Q16799 776 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 CCDC91Q7Z6B0 441 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 DIS3L2Q8IYB7 885 aaKnown RBP13.11□□□□□ -0.31
SOX9-201ENST00000245479 KNDC1Q76NI1 1749 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 WDHD1O75717 1129 aaPredicted RBP13.11□□□□□ -0.31
SOX9-201ENST00000245479 SSBP05455 408 aaKnown RBP eCLIP13.11□□□□□ -0.31
SOX9-201ENST00000245479 CCDC175P0C221 793 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 CTSWP56202 376 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 NLRP10Q86W26 655 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 CEP112Q8N8E3 955 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 SPATA5Q8NB90 893 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 KCNG4Q8TDN1 519 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 PPM1EQ8WY54 764 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 ATG3Q9NT62 314 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 TCHHQ07283 1943 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 COL15A1P39059 1388 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 TSPY2A6NKD2 308 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 PFKFB1P16118 471 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 GUCY1A2P33402 732 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 FANCCQ00597 558 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 BAG1Q99933 345 aaPredicted RBP13.11□□□□□ -0.31
SOX9-201ENST00000245479 ZSWIM5Q9P217 1185 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 RRP15Q9Y3B9 282 aaKnown RBP13.11□□□□□ -0.31
SOX9-201ENST00000245479 HEG1Q9ULI3 1381 aa13.11□□□□□ -0.31
SOX9-201ENST00000245479 CDC27P30260 824 aa13.1□□□□□ -0.31
SOX9-201ENST00000245479 LCORLQ8N3X6 602 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms