RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 DEFB129Q9H1M3 183 aa12.19□□□□□ -0.46
HMGCL-201ENST00000235958 ATP8A2Q9NTI2 1148 aa12.19□□□□□ -0.46
HMGCL-201ENST00000235958 MKRN1Q9UHC7 482 aaKnown RBP12.19□□□□□ -0.46
HMGCL-201ENST00000235958 ECM29Q5VYK3 1845 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 MAST2Q6P0Q8 1798 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 CCDC171Q6TFL3 1326 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 HSPD1P10809 573 aaKnown RBP12.18□□□□□ -0.46
HMGCL-201ENST00000235958 TNNI2P48788 182 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 TNFAIP1Q13829 316 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 PRAMEF18Q5VWM3 479 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 CHADLQ6NUI6 762 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 CDC37L1Q7L3B6 337 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 TMEM39BQ9GZU3 492 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 DCP1AQ9NPI6 582 aaPredicted RBP12.18□□□□□ -0.46
HMGCL-201ENST00000235958 CNTNAP1P78357 1384 aa12.18□□□□□ -0.46
HMGCL-201ENST00000235958 CDK5RAP2Q96SN8 1893 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 USP17L12C9JPN9 530 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 USP17L21D6R901 530 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 FOXP2O15409 715 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 FGAP02671 866 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 PTH1RQ03431 593 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 ALX1Q15699 326 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 GIMAP6Q6P9H5 292 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 KIAA1211Q6ZU35 1233 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 SH3BP5LQ7L8J4 393 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 IFNL3Q8IZI9 196 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 GLIS2Q9BZE0 524 aaPredicted RBP12.17□□□□□ -0.46
HMGCL-201ENST00000235958 OSBPL5Q9H0X9 879 aaPredicted RBP12.17□□□□□ -0.46
HMGCL-201ENST00000235958 SAP30BPQ9UHR5 308 aaKnown RBP12.17□□□□□ -0.46
HMGCL-201ENST00000235958 PALD1Q9ULE6 856 aa12.17□□□□□ -0.46
HMGCL-201ENST00000235958 FLT1P17948 1338 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 BAZ2AQ9UIF9 1905 aaKnown RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 DDTLA6NHG4 134 aaPredicted RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 ADM5C9JUS6 153 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 TOMM70O94826 608 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 ITGBL1O95965 494 aaPredicted RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 POLR3DP05423 398 aaPredicted RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 NBPF12Q5TAG4 269 aaPredicted RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 CTR9Q6PD62 1173 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 ZSCAN29Q8IWY8 852 aaPredicted RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 DDRGK1Q96HY6 314 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 TEPSINQ96N21 525 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 NACAP1Q9BZK3 213 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 MCM9Q9NXL9 1143 aa12.16□□□□□ -0.46
HMGCL-201ENST00000235958 RPAP1Q9BWH6 1393 aaPredicted RBP12.16□□□□□ -0.46
HMGCL-201ENST00000235958 MYH1P12882 1939 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 RAD50Q92878 1312 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 TRAF5O00463 557 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 PLCD1P51178 756 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 FMR1Q06787 632 aaKnown RBP eCLIP12.15□□□□□ -0.46
HMGCL-201ENST00000235958 SLC4A8Q2Y0W8 1093 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 FOXP4Q8IVH2 680 aaPredicted RBP12.15□□□□□ -0.46
HMGCL-201ENST00000235958 CDAN1Q8IWY9 1227 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 MAP4K1Q92918 833 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 DSCC1Q9BVC3 393 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 NAPBQ9H115 298 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 DHX36Q9H2U1 1008 aaKnown RBP12.15□□□□□ -0.46
HMGCL-201ENST00000235958 EPB41L4AQ9HCS5 686 aaPredicted RBP12.15□□□□□ -0.46
HMGCL-201ENST00000235958 PI4KBQ9UBF8 816 aa12.15□□□□□ -0.46
HMGCL-201ENST00000235958 CYP2D7A0A087X1C5 515 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 MINDY4BA8MYZ0 360 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 SMIM22K7EJ46 135 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 CYP2D6P10635 497 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 TDO2P48775 406 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 SUPT20HL1Q3ZLR7 823 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 C8orf34Q49A92 452 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 SBK1Q52WX2 424 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 C12orf60Q5U649 245 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 MIGA2Q7L4E1 593 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 TTC6Q86TZ1 520 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 SMC1BQ8NDV3 1235 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 RBM46Q8TBY0 533 aaKnown RBP12.14□□□□□ -0.47
HMGCL-201ENST00000235958 CSRNP1Q96S65 589 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 LSG1Q9H089 658 aaKnown RBP12.14□□□□□ -0.47
HMGCL-201ENST00000235958 ANO2Q9NQ90 1003 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 PPP2R3BQ9Y5P8 575 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 FOCADQ5VW36 1801 aa12.14□□□□□ -0.47
HMGCL-201ENST00000235958 SEC24BO95487 1268 aa12.13□□□□□ -0.47
HMGCL-201ENST00000235958 SLURP2P0DP57 97 aa12.13□□□□□ -0.47
HMGCL-201ENST00000235958 EVX2Q03828 476 aa12.13□□□□□ -0.47
HMGCL-201ENST00000235958 CDCA5Q96FF9 252 aa12.13□□□□□ -0.47
HMGCL-201ENST00000235958 CTNNA3Q9UI47 895 aa12.13□□□□□ -0.47
HMGCL-201ENST00000235958 REC8O95072 547 aa12.12□□□□□ -0.47
HMGCL-201ENST00000235958 MAP3K10Q02779 954 aa12.12□□□□□ -0.47
HMGCL-201ENST00000235958 METTL16Q86W50 562 aaKnown RBP12.12□□□□□ -0.47
HMGCL-201ENST00000235958 AMOTL1Q8IY63 956 aa12.12□□□□□ -0.47
HMGCL-201ENST00000235958 USP26Q9BXU7 913 aa12.12□□□□□ -0.47
HMGCL-201ENST00000235958 U3KPZ7 1027 aaPredicted RBP12.12□□□□□ -0.47
HMGCL-201ENST00000235958 ATRNL1Q5VV63 1379 aa12.12□□□□□ -0.47
HMGCL-201ENST00000235958 ZNF213O14771 459 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 TBC1D12O60347 775 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 HLA-DOAP06340 250 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 HAND2P61296 217 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 FSTL1Q12841 308 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 NECTIN1Q15223 517 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 CST9Q5W186 159 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 STK11IPQ8N1F8 1099 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 CRACR2BQ8N4Y2 399 aaPredicted RBP12.11□□□□□ -0.47
HMGCL-201ENST00000235958 HOOK2Q96ED9 719 aa12.11□□□□□ -0.47
HMGCL-201ENST00000235958 DYNLL2Q96FJ2 89 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms