RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 APPP05067 770 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 ZFYP08048 801 aaPredicted RBP14.25□□□□□ -0.13
NUP88-201ENST00000225696 MAP3K9P80192 1104 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 KARSQ15046 597 aaKnown RBP14.25□□□□□ -0.13
NUP88-201ENST00000225696 SLC9C2Q5TAH2 1124 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 CCDC102BQ68D86 513 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 TICAM2Q86XR7 235 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 KIFC2Q96AC6 838 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 UBXN6Q9BZV1 441 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 MAN1B1Q9UKM7 699 aa14.25□□□□□ -0.13
NUP88-201ENST00000225696 CCDC66A2RUB6 948 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 BTBD18B2RXH4 712 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 ARHGAP6O43182 974 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 TUBB4AP04350 444 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 TEX35Q5T0J7 233 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 CC2D1AQ6P1N0 951 aaPredicted RBP14.24□□□□□ -0.13
NUP88-201ENST00000225696 OLFM4Q6UX06 510 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 USP49Q70CQ1 688 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 CMTR1Q8N1G2 835 aaKnown RBP14.24□□□□□ -0.13
NUP88-201ENST00000225696 IGDCC4Q8TDY8 1250 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 MRPL44Q9H9J2 332 aaKnown RBP14.24□□□□□ -0.13
NUP88-201ENST00000225696 PIH1D3Q9NQM4 214 aaKnown RBP14.24□□□□□ -0.13
NUP88-201ENST00000225696 SAMSN1Q9NSI8 373 aaKnown RBP14.24□□□□□ -0.13
NUP88-201ENST00000225696 ATG3Q9NT62 314 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 NFE2L3Q9Y4A8 694 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 NUP188Q5SRE5 1749 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 SPEF2Q9C093 1822 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 CAPN2P17655 700 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 DHX58Q96C10 678 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 ZSWIM4Q9H7M6 989 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.24□□□□□ -0.13
NUP88-201ENST00000225696 KCNJ14Q9UNX9 436 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 MRFAP1Q9Y605 127 aa14.24□□□□□ -0.13
NUP88-201ENST00000225696 CCP110O43303 1012 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 TFRCP02786 760 aaKnown RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 ZNF18P17022 549 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 CASQ1P31415 396 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 ADD2P35612 726 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 TRDNQ13061 729 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 CCDC82Q8N4S0 544 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 SMARCE1Q969G3 411 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 SLC26A6Q9BXS9 759 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 TEX13AQ9BXU3 409 aaPredicted RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 PARD6BQ9BYG5 372 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 LY9Q9HBG7 655 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 MYO5AQ9Y4I1 1855 aaKnown RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 KIF1AQ12756 1690 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 POLR2DO15514 142 aaKnown RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 ZSCAN12O43309 604 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 CUTAO60888 179 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 IDH1O75874 414 aaKnown RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 GTF2E1P29083 439 aaPredicted RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 IARSP41252 1262 aaKnown RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 PPP2R3AQ06190 1150 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 RSRC2Q7L4I2 434 aaKnown RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 JMYQ8N9B5 988 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 ARGLU1Q9NWB6 273 aaPredicted RBP14.23□□□□□ -0.13
NUP88-201ENST00000225696 SERTAD1Q9UHV2 236 aa14.23□□□□□ -0.13
NUP88-201ENST00000225696 DCCP43146 1447 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 C1orf167Q5SNV9 1468 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 SOWAHDA6NJG2 315 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 ZBTB43O43298 467 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 OAS2P29728 719 aaKnown RBP14.22□□□□□ -0.13
NUP88-201ENST00000225696 CTDSPL2Q05D32 466 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 NFXL1Q6ZNB6 911 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 MPHOSPH8Q99549 860 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 ISCA1Q9BUE6 129 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 SRRTQ9BXP5 876 aaKnown RBP14.22□□□□□ -0.13
NUP88-201ENST00000225696 WWC3Q9ULE0 1092 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 AKAP2Q9Y2D5 859 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 ECM29Q5VYK3 1845 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 TEX33O43247 280 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 NR5A1Q13285 461 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 DHX8Q14562 1220 aaKnown RBP14.22□□□□□ -0.13
NUP88-201ENST00000225696 POSTNQ15063 836 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 SPECC1LQ69YQ0 1117 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 FCHSD1Q86WN1 690 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 KRI1Q8N9T8 703 aaKnown RBP14.22□□□□□ -0.13
NUP88-201ENST00000225696 WDR19Q8NEZ3 1342 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 ZNF532Q9HCE3 1301 aa14.22□□□□□ -0.13
NUP88-201ENST00000225696 RIC1Q4ADV7 1423 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 COL18A1P39060 1754 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 AKAP11Q9UKA4 1901 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 GOLGA8AA7E2F4 631 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 STX10O60499 249 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 ATP2B1P20020 1258 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 CDK11BP21127 795 aaKnown RBP14.21□□□□□ -0.13
NUP88-201ENST00000225696 CASP1P29466 404 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 TAF7LQ5H9L4 462 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 NOSTRINQ8IVI9 506 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 BBXQ8WY36 941 aaPredicted RBP14.21□□□□□ -0.13
NUP88-201ENST00000225696 FUT8Q9BYC5 575 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 ZSWIM5Q9P217 1185 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 FBXO2Q9UK22 296 aaPredicted RBP14.21□□□□□ -0.13
NUP88-201ENST00000225696 RIPOR2Q9Y4F9 1068 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 PCDHB6Q9Y5E3 794 aa14.21□□□□□ -0.13
NUP88-201ENST00000225696 LAMB4A4D0S4 1761 aa14.21□□□□□ -0.14
NUP88-201ENST00000225696 SARSP49591 514 aaKnown RBP14.2□□□□□ -0.14
NUP88-201ENST00000225696 SMC1AQ14683 1233 aaKnown RBP14.2□□□□□ -0.14
NUP88-201ENST00000225696 TMEM67Q5HYA8 995 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms