RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 IghaA0A0A6YXW6 389 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Lipo1J3QME6 396 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Clul1Q3ZRW6 464 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Pold4Q9CWP8 107 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Hip1rQ9JKY5 1068 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Lnx1O70263 728 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Gna11P21278 359 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Usp28Q5I043 1051 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 CtcfQ61164 736 aaKnown RBP17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Bola3Q8CEI1 110 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Slc4a8Q8JZR6 1089 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Ube3bQ9ES34 1070 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Atp1b3P97370 278 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Kif1bpQ6ZPU9 617 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Cd274Q9EP73 290 aa17.55■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Aox2Q5SGK3 1345 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Spocd1B1ASB6 936 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 PparaP23204 468 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Tubb4bP68372 445 aaKnown RBP17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Sh3d21Q7TSG5 549 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Taok3Q8BYC6 898 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Zswim4Q8C7B8 1101 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Tmem132aQ922P8 1018 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 AdnpQ9Z103 1108 aaKnown RBP17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Hexim1Q8R409 356 aaKnown RBP17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Olr1Q9EQ09 363 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 MypnQ5DTJ9 1315 aa17.54■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Eif6O55135 245 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Atp6v1aP50516 617 aaKnown RBP17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Als2cr12Q8BVM7 383 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Gm4340L7N2C4 268 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Haus2Q9CQS9 234 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Gjc1P28229 396 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Pdlim2Q8R1G6 349 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Mylk2Q8VCR8 613 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Nfe2l3Q9WTM4 660 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Plekhg2Q6KAU7 1340 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Pcdhb9E9Q5G2 828 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Znf697Q569E7 569 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Naa15Q80UM3 865 aaKnown RBP17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Frat2Q8K025 231 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Nod2Q8K3Z0 1020 aa17.53■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Palm3A2TJV2 734 aa17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 MthfslL7N466 203 aa17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Ssfa2Q922B9 1252 aa17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Rbm33Q9CXK9 1231 aaKnown RBP17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Elf2Q9JHC9 593 aa17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Emilin1Q99K41 1017 aa17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Pde5aQ8CG03 865 aa17.52■□□□□ 0.4
Ccdc88b-201ENSMUST00000113440 Cyp3a57D3YYZ0 503 aa17.52■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 NpcdF8VQB8 469 aa17.52■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Diaph1O08808 1255 aa17.52■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Mx1P09922 631 aa17.52■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Kcnk13Q8R1P5 405 aa17.52■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Egfl6Q9JJZ5 550 aa17.52■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tuft1O08970 390 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Mb21d2Q8C525 428 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ppfibp1Q8C8U0 969 aaKnown RBP17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Abca8aQ8K442 1620 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 VrtnQ3SYK4 740 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Nlrp2Q4PLS0 1046 aaKnown RBP17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Smarcc2Q6PDG5 1213 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Prr5lA2AVJ5 370 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Fam186bD3Z420 943 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Zfp317Q8C0Q5 607 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Col15a1O35206 1367 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Setdb1O88974 1307 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Epb41l2O70318 988 aaKnown RBP17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tmtc2Q56A06 836 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Cfap53Q9D439 514 aa17.51■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Brpf3B2KF05 1204 aaKnown RBP17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Cep63Q3UPP8 700 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Igbp1Q61249 340 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Hdac9Q99N13 588 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ehd4Q9EQP2 541 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Zfp804bA0A0G2JGH6 1343 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 U2af2P26369 475 aaKnown RBP17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 NppbP40753 121 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 FliiQ9JJ28 1271 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Snapc4Q8BP86 1333 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Map2k1P31938 393 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ccdc174Q3U155 467 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Pcdhb15Q91Y04 786 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Dip2bQ3UH60 1574 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Map3k12Q60700 888 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Add2Q9QYB8 725 aa17.5■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tbc1d2B1AVH7 922 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Acap3Q6NXL5 833 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Zkscan5Q9Z1D8 819 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Pcdh10E9PXQ7 1057 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ddit3P35639 168 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tubgcp2Q921G8 905 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Fbf1A2A870 1173 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Zbtb7aO88939 569 aaKnown RBP17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Pde11aP0C1Q2 933 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Tubb5P99024 444 aaKnown RBP17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 AdpgkQ8VDL4 496 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Clca2Q8BG22 942 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Ccdc105Q9D4K7 499 aa17.49■□□□□ 0.39
Ccdc88b-201ENSMUST00000113440 Sos2Q02384 1333 aa17.48■□□□□ 0.39
Retrieved 100 of 22,080 RNA–protein pairs in 17.8 ms