RNA–Protein interactions for RNA: YBR228W

SLX1, Transcript of Endonuclease involved in DNA recombination and repair, yeast

Gene SLX1, Length 915 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SLX1	YBR228W	ATH1	P48016	1211 aa		11.26	□□□□□ -0.61
SLX1	YBR228W	BMT6	Q12291	365 aa		11.26	□□□□□ -0.61
SLX1	YBR228W	SEC61	P32915	480 aa		11.23	□□□□□ -0.61
SLX1	YBR228W	YEL023C	P39992	682 aa		11.23	□□□□□ -0.61
SLX1	YBR228W	TFG1	P41895	735 aa	Predicted RBP	11.23	□□□□□ -0.61
SLX1	YBR228W	JIP4	Q03361	876 aa		11.22	□□□□□ -0.61
SLX1	YBR228W	GUT1	P32190	709 aa		11.18	□□□□□ -0.62
SLX1	YBR228W	DAN4	P47179	1161 aa		11.17	□□□□□ -0.62
SLX1	YBR228W	PTC4	P38089	393 aa		11.16	□□□□□ -0.62
SLX1	YBR228W	SAP30	P38429	201 aa		11.09	□□□□□ -0.63
SLX1	YBR228W	SET1	P38827	1080 aa	Known RBP	11.06	□□□□□ -0.64
SLX1	YBR228W	YDL129W	Q07555	291 aa		11.06	□□□□□ -0.64
SLX1	YBR228W	NOP53	Q12080	455 aa	Known RBP	11.05	□□□□□ -0.64
SLX1	YBR228W	PML39	Q03760	334 aa		11.01	□□□□□ -0.65
SLX1	YBR228W	SOL3	P38858	249 aa		11	□□□□□ -0.65
SLX1	YBR228W	NST1	P53935	1240 aa		10.97	□□□□□ -0.65
SLX1	YBR228W	YGR273C	P53329	174 aa		10.94	□□□□□ -0.66
SLX1	YBR228W	AI4	P03878	556 aa		10.92	□□□□□ -0.66
SLX1	YBR228W	MPH3	P0CE00	602 aa		10.92	□□□□□ -0.66
SLX1	YBR228W	MID1	P41821	548 aa		10.89	□□□□□ -0.67
SLX1	YBR228W	ILV3	P39522	585 aa	Known RBP	10.87	□□□□□ -0.67
SLX1	YBR228W	PEX29	Q03370	554 aa		10.87	□□□□□ -0.67
SLX1	YBR228W	PRE3	P38624	215 aa		10.84	□□□□□ -0.67
SLX1	YBR228W	CHL1	P22516	861 aa	Predicted RBP	10.83	□□□□□ -0.68
SLX1	YBR228W	ELP4	Q02884	456 aa	Known RBP	10.82	□□□□□ -0.68
SLX1	YBR228W	YDR344C	Q05510	147 aa		10.82	□□□□□ -0.68
SLX1	YBR228W	IFH1	P39520	1085 aa		10.78	□□□□□ -0.68
SLX1	YBR228W	VHR2	P40041	505 aa		10.77	□□□□□ -0.69
SLX1	YBR228W	KEX1	P09620	729 aa		10.76	□□□□□ -0.69
SLX1	YBR228W	SLI15	P38283	698 aa		10.73	□□□□□ -0.69
SLX1	YBR228W	ARH1	P48360	493 aa		10.73	□□□□□ -0.69
SLX1	YBR228W	DMA1	P38823	416 aa		10.71	□□□□□ -0.69
SLX1	YBR228W	YLR326W	Q06170	240 aa	Known RBP	10.71	□□□□□ -0.69
SLX1	YBR228W	BCK2	P33306	851 aa		10.7	□□□□□ -0.7
SLX1	YBR228W	MPC54	Q08550	464 aa		10.7	□□□□□ -0.7
SLX1	YBR228W	UBP14	P38237	781 aa	Known RBP	10.68	□□□□□ -0.7
SLX1	YBR228W	VPS70	P47161	811 aa		10.68	□□□□□ -0.7
SLX1	YBR228W	HAP5	Q02516	242 aa		10.67	□□□□□ -0.7
SLX1	YBR228W	YPR148C	Q06523	435 aa		10.67	□□□□□ -0.7
SLX1	YBR228W	RAD54	P32863	898 aa		10.65	□□□□□ -0.7
SLX1	YBR228W	DPL1	Q05567	589 aa		10.63	□□□□□ -0.71
SLX1	YBR228W	SPT23	P35210	1082 aa		10.62	□□□□□ -0.71
SLX1	YBR228W	VRP1	P37370	817 aa		10.62	□□□□□ -0.71
SLX1	YBR228W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	10.62	□□□□□ -0.71	RIP-Chip
SLX1	YBR228W	NMA111	P53920	997 aa		10.62	□□□□□ -0.71
SLX1	YBR228W	KIC1	P38692	1080 aa		10.6	□□□□□ -0.71
SLX1	YBR228W	REF2	P42073	533 aa	Predicted RBP	10.59	□□□□□ -0.71
SLX1	YBR228W	CDC73	Q06697	393 aa		10.58	□□□□□ -0.72
SLX1	YBR228W	BNI4	P53858	892 aa		10.56	□□□□□ -0.72
SLX1	YBR228W	PTC2	P39966	464 aa	Known RBP	10.55	□□□□□ -0.72
SLX1	YBR228W	YDR090C	Q03193	310 aa		10.54	□□□□□ -0.72
SLX1	YBR228W	RPP1B	P10622	106 aa	Known RBP	10.52	□□□□□ -0.73
SLX1	YBR228W	ISU2	Q12056	156 aa		10.5	□□□□□ -0.73
SLX1	YBR228W	XDJ1	P39102	459 aa		10.45	□□□□□ -0.74
SLX1	YBR228W	YML082W	Q04533	649 aa	Known RBP	10.43	□□□□□ -0.74
SLX1	YBR228W	CKB1	P43639	278 aa		10.42	□□□□□ -0.74
SLX1	YBR228W	PEX21	P50091	288 aa		10.42	□□□□□ -0.74
SLX1	YBR228W	MAK21	Q12176	1025 aa	Known RBP	10.41	□□□□□ -0.74
SLX1	YBR228W	COX6	P00427	148 aa		10.4	□□□□□ -0.74
SLX1	YBR228W	PDR1	P12383	1068 aa		10.38	□□□□□ -0.75
SLX1	YBR228W	PBS2	P08018	668 aa		10.37	□□□□□ -0.75
SLX1	YBR228W	YPR015C	Q12531	247 aa		10.36	□□□□□ -0.75
SLX1	YBR228W	SAS10	Q12136	610 aa	Predicted RBP	10.35	□□□□□ -0.75
SLX1	YBR228W	YRR1	Q12172	810 aa		10.34	□□□□□ -0.75
SLX1	YBR228W	ORC6	P38826	435 aa		10.33	□□□□□ -0.76
SLX1	YBR228W	CSC1	Q06538	782 aa		10.33	□□□□□ -0.76
SLX1	YBR228W	RAM1	P22007	431 aa		10.32	□□□□□ -0.76
SLX1	YBR228W	TUM1	Q08686	304 aa	Known RBP	10.3	□□□□□ -0.76
SLX1	YBR228W	GAP1	P19145	602 aa	Predicted RBP	10.29	□□□□□ -0.76
SLX1	YBR228W	GYP1	Q08484	637 aa		10.29	□□□□□ -0.76
SLX1	YBR228W	TFB4	Q12004	338 aa		10.29	□□□□□ -0.76
SLX1	YBR228W	DPS1	P04802	557 aa	Known RBP	10.28	□□□□□ -0.76
SLX1	YBR228W	MAM3	Q12296	706 aa		10.26	□□□□□ -0.77
SLX1	YBR228W	RQC2	Q12532	1038 aa	Known RBP	10.26	□□□□□ -0.77
SLX1	YBR228W	SPB4	P25808	606 aa	Predicted RBP	10.24	□□□□□ -0.77
SLX1	YBR228W	MVP1	P40959	511 aa	Known RBP	10.22	□□□□□ -0.77
SLX1	YBR228W	NUD1	P32336	851 aa		10.2	□□□□□ -0.78
SLX1	YBR228W	NPL4	P33755	580 aa		10.19	□□□□□ -0.78
SLX1	YBR228W	DSF2	P38213	736 aa		10.19	□□□□□ -0.78
SLX1	YBR228W	IES2	P40154	320 aa		10.19	□□□□□ -0.78
SLX1	YBR228W	RGR1	P19263	1082 aa		10.18	□□□□□ -0.78
SLX1	YBR228W	STR2	P47164	639 aa		10.17	□□□□□ -0.78
SLX1	YBR228W	YPR109W	Q06104	294 aa		10.17	□□□□□ -0.78
SLX1	YBR228W	ISM1	P48526	1002 aa		10.15	□□□□□ -0.78
SLX1	YBR228W	SAS4	Q04003	481 aa		10.14	□□□□□ -0.79
SLX1	YBR228W	BUD20	Q08004	166 aa	Predicted RBP	10.14	□□□□□ -0.79
SLX1	YBR228W	PRT1	P06103	763 aa	Known RBP	10.12	□□□□□ -0.79
SLX1	YBR228W	PSE1	P32337	1089 aa	Known RBP	10.12	□□□□□ -0.79
SLX1	YBR228W	GCD11	P32481	527 aa	Known RBP	10.09	□□□□□ -0.79
SLX1	YBR228W	RAS1	P01119	309 aa		10.06	□□□□□ -0.8
SLX1	YBR228W	NUP42	P49686	430 aa	Known RBP	10.05	□□□□□ -0.8
SLX1	YBR228W	AMS1	P22855	1083 aa		10.03	□□□□□ -0.8
SLX1	YBR228W	MRF1	P30775	413 aa	Predicted RBP	10.03	□□□□□ -0.8
SLX1	YBR228W	DIT2	P21595	489 aa		10.02	□□□□□ -0.81
SLX1	YBR228W	SDH2	P21801	266 aa		10.02	□□□□□ -0.81
SLX1	YBR228W	CLB5	P30283	435 aa		10.02	□□□□□ -0.81
SLX1	YBR228W	TY1A-DR4	O74302	440 aa		10.01	□□□□□ -0.81
SLX1	YBR228W	TY1A-H	P0C2I4	478 aa	Known RBP	10.01	□□□□□ -0.81
SLX1	YBR228W	TY1A-A	P0CX57	440 aa		10.01	□□□□□ -0.81
SLX1	YBR228W	TY1A-PR1	P0CX58	440 aa		10.01	□□□□□ -0.81

Retrieved 100 of 5,963 RNA–protein pairs in 26.9 ms