RNA–Protein interactions for RNA: YBL024W

NCL1, Transcript of S-adenosyl-L-methionine-dependent tRNA: m5C-methyltransferase, yeast

Gene NCL1, Length 2,055 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NCL1	YBL024W	YNL035C	P53962	389 aa	Known RBP	4.74	□□□□□ -1.65
NCL1	YBL024W	NOP53	Q12080	455 aa	Known RBP	4.74	□□□□□ -1.65
NCL1	YBL024W	GUT1	P32190	709 aa		4.74	□□□□□ -1.65
NCL1	YBL024W	JIP4	Q03361	876 aa		4.73	□□□□□ -1.65
NCL1	YBL024W	AIR2	Q12476	344 aa	Known RBP	4.73	□□□□□ -1.65
NCL1	YBL024W	TFG1	P41895	735 aa	Predicted RBP	4.73	□□□□□ -1.65
NCL1	YBL024W	SEC61	P32915	480 aa		4.72	□□□□□ -1.65
NCL1	YBL024W	SET1	P38827	1080 aa	Known RBP	4.72	□□□□□ -1.65
NCL1	YBL024W	NCR1	Q12200	1170 aa		4.71	□□□□□ -1.65
NCL1	YBL024W	YEL023C	P39992	682 aa		4.71	□□□□□ -1.66
NCL1	YBL024W	BMT6	Q12291	365 aa		4.69	□□□□□ -1.66
NCL1	YBL024W	PTC4	P38089	393 aa		4.69	□□□□□ -1.66
NCL1	YBL024W	IFH1	P39520	1085 aa		4.66	□□□□□ -1.66
NCL1	YBL024W	DAN4	P47179	1161 aa		4.66	□□□□□ -1.66
NCL1	YBL024W	YDL129W	Q07555	291 aa		4.65	□□□□□ -1.67
NCL1	YBL024W	SAP30	P38429	201 aa		4.63	□□□□□ -1.67
NCL1	YBL024W	YGR273C	P53329	174 aa		4.63	□□□□□ -1.67
NCL1	YBL024W	AI4	P03878	556 aa		4.61	□□□□□ -1.67
NCL1	YBL024W	MPH3	P0CE00	602 aa		4.61	□□□□□ -1.67
NCL1	YBL024W	SOL3	P38858	249 aa		4.61	□□□□□ -1.67
NCL1	YBL024W	PML39	Q03760	334 aa		4.61	□□□□□ -1.67
NCL1	YBL024W	NST1	P53935	1240 aa		4.6	□□□□□ -1.67
NCL1	YBL024W	PEX29	Q03370	554 aa		4.6	□□□□□ -1.67
NCL1	YBL024W	YPR148C	Q06523	435 aa		4.58	□□□□□ -1.68
NCL1	YBL024W	VPS70	P47161	811 aa		4.58	□□□□□ -1.68
NCL1	YBL024W	ILV3	P39522	585 aa	Known RBP	4.57	□□□□□ -1.68
NCL1	YBL024W	VHR2	P40041	505 aa		4.57	□□□□□ -1.68
NCL1	YBL024W	KEX1	P09620	729 aa		4.55	□□□□□ -1.68
NCL1	YBL024W	MID1	P41821	548 aa		4.55	□□□□□ -1.68
NCL1	YBL024W	ELP4	Q02884	456 aa	Known RBP	4.55	□□□□□ -1.68
NCL1	YBL024W	CHL1	P22516	861 aa	Predicted RBP	4.54	□□□□□ -1.68
NCL1	YBL024W	RAD54	P32863	898 aa		4.54	□□□□□ -1.68
NCL1	YBL024W	KIC1	P38692	1080 aa		4.54	□□□□□ -1.68
NCL1	YBL024W	REF2	P42073	533 aa	Predicted RBP	4.54	□□□□□ -1.68
NCL1	YBL024W	PRE3	P38624	215 aa		4.53	□□□□□ -1.68
NCL1	YBL024W	YLR326W	Q06170	240 aa	Known RBP	4.53	□□□□□ -1.68
NCL1	YBL024W	RPP1B	P10622	106 aa	Known RBP	4.52	□□□□□ -1.69
NCL1	YBL024W	UBP14	P38237	781 aa	Known RBP	4.52	□□□□□ -1.69
NCL1	YBL024W	SLI15	P38283	698 aa		4.52	□□□□□ -1.69
NCL1	YBL024W	CKB1	P43639	278 aa		4.52	□□□□□ -1.69
NCL1	YBL024W	ARH1	P48360	493 aa		4.51	□□□□□ -1.69
NCL1	YBL024W	MPC54	Q08550	464 aa		4.5	□□□□□ -1.69
NCL1	YBL024W	HAP5	Q02516	242 aa		4.49	□□□□□ -1.69
NCL1	YBL024W	DPL1	Q05567	589 aa		4.49	□□□□□ -1.69
NCL1	YBL024W	MAK21	Q12176	1025 aa	Known RBP	4.49	□□□□□ -1.69
NCL1	YBL024W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	4.49	□□□□□ -1.69	not detected
NCL1	YBL024W	SAS10	Q12136	610 aa	Predicted RBP	4.49	□□□□□ -1.69
NCL1	YBL024W	SPT23	P35210	1082 aa		4.48	□□□□□ -1.69
NCL1	YBL024W	BCK2	P33306	851 aa		4.47	□□□□□ -1.69
NCL1	YBL024W	YDR090C	Q03193	310 aa		4.47	□□□□□ -1.69
NCL1	YBL024W	YDR344C	Q05510	147 aa		4.47	□□□□□ -1.69
NCL1	YBL024W	NMA111	P53920	997 aa		4.46	□□□□□ -1.7
NCL1	YBL024W	CDC73	Q06697	393 aa		4.46	□□□□□ -1.7
NCL1	YBL024W	COX6	P00427	148 aa		4.45	□□□□□ -1.7
NCL1	YBL024W	ISU2	Q12056	156 aa		4.45	□□□□□ -1.7
NCL1	YBL024W	PBS2	P08018	668 aa		4.45	□□□□□ -1.7
NCL1	YBL024W	BNI4	P53858	892 aa		4.45	□□□□□ -1.7
NCL1	YBL024W	PTC2	P39966	464 aa	Known RBP	4.44	□□□□□ -1.7
NCL1	YBL024W	PEX21	P50091	288 aa		4.44	□□□□□ -1.7
NCL1	YBL024W	SPB4	P25808	606 aa	Predicted RBP	4.43	□□□□□ -1.7
NCL1	YBL024W	VRP1	P37370	817 aa		4.42	□□□□□ -1.7
NCL1	YBL024W	LEO1	P38439	464 aa		4.42	□□□□□ -1.7
NCL1	YBL024W	TAF7	Q05021	590 aa		4.41	□□□□□ -1.7
NCL1	YBL024W	CSC1	Q06538	782 aa		4.41	□□□□□ -1.7
NCL1	YBL024W	MAM3	Q12296	706 aa		4.41	□□□□□ -1.7
NCL1	YBL024W	TFB4	Q12004	338 aa		4.4	□□□□□ -1.71
NCL1	YBL024W	YML082W	Q04533	649 aa	Known RBP	4.39	□□□□□ -1.71
NCL1	YBL024W	DSF2	P38213	736 aa		4.39	□□□□□ -1.71
NCL1	YBL024W	ORC6	P38826	435 aa		4.39	□□□□□ -1.71
NCL1	YBL024W	XDJ1	P39102	459 aa		4.38	□□□□□ -1.71
NCL1	YBL024W	YRR1	Q12172	810 aa		4.37	□□□□□ -1.71
NCL1	YBL024W	IES2	P40154	320 aa		4.37	□□□□□ -1.71
NCL1	YBL024W	LEU3	P08638	886 aa		4.36	□□□□□ -1.71
NCL1	YBL024W	GAP1	P19145	602 aa	Predicted RBP	4.36	□□□□□ -1.71
NCL1	YBL024W	TUM1	Q08686	304 aa	Known RBP	4.36	□□□□□ -1.71
NCL1	YBL024W	PDR1	P12383	1068 aa		4.36	□□□□□ -1.71
NCL1	YBL024W	PSE1	P32337	1089 aa	Known RBP	4.34	□□□□□ -1.71
NCL1	YBL024W	NPL4	P33755	580 aa		4.34	□□□□□ -1.71
NCL1	YBL024W	MVP1	P40959	511 aa	Known RBP	4.34	□□□□□ -1.71
NCL1	YBL024W	GYP1	Q08484	637 aa		4.34	□□□□□ -1.71
NCL1	YBL024W	RAM1	P22007	431 aa		4.33	□□□□□ -1.72
NCL1	YBL024W	YPR109W	Q06104	294 aa		4.33	□□□□□ -1.72
NCL1	YBL024W	RGR1	P19263	1082 aa		4.33	□□□□□ -1.72
NCL1	YBL024W	YPR015C	Q12531	247 aa		4.33	□□□□□ -1.72
NCL1	YBL024W	CLB5	P30283	435 aa		4.32	□□□□□ -1.72
NCL1	YBL024W	NUD1	P32336	851 aa		4.32	□□□□□ -1.72
NCL1	YBL024W	NUP42	P49686	430 aa	Known RBP	4.3	□□□□□ -1.72
NCL1	YBL024W	SAS4	Q04003	481 aa		4.3	□□□□□ -1.72
NCL1	YBL024W	ISM1	P48526	1002 aa		4.29	□□□□□ -1.72
NCL1	YBL024W	DPS1	P04802	557 aa	Known RBP	4.28	□□□□□ -1.72
NCL1	YBL024W	PRT1	P06103	763 aa	Known RBP	4.28	□□□□□ -1.72
NCL1	YBL024W	DIT2	P21595	489 aa		4.28	□□□□□ -1.72
NCL1	YBL024W	GCD11	P32481	527 aa	Known RBP	4.28	□□□□□ -1.72
NCL1	YBL024W	STR2	P47164	639 aa		4.28	□□□□□ -1.72
NCL1	YBL024W	TEA1	P47988	759 aa		4.28	□□□□□ -1.72
NCL1	YBL024W	BUD20	Q08004	166 aa	Predicted RBP	4.27	□□□□□ -1.73
NCL1	YBL024W	MRF1	P30775	413 aa	Predicted RBP	4.26	□□□□□ -1.73
NCL1	YBL024W	ATF2	P53296	535 aa		4.26	□□□□□ -1.73
NCL1	YBL024W	YNR021W	P53723	404 aa	Known RBP	4.26	□□□□□ -1.73
NCL1	YBL024W	PAT1	P25644	796 aa	Known RBP	4.25	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 7.6 ms