RNA–Protein interactions for RNA: ENST00000642072.1

LINC00339-212, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 338 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-212ENST00000642072 JPH4Q96JJ6 628 aa15.48■□□□□ 0.07
LINC00339-212ENST00000642072 MAPKBP1O60336 1514 aa15.43■□□□□ 0.06
LINC00339-212ENST00000642072 ABCC10Q5T3U5 1492 aa15.43■□□□□ 0.06
LINC00339-212ENST00000642072 ADCY10Q96PN6 1610 aa15.4■□□□□ 0.06
LINC00339-212ENST00000642072 DIP2BQ9P265 1576 aa15.39■□□□□ 0.05
LINC00339-212ENST00000642072 KIAA0586Q9BVV6 1533 aa15.38■□□□□ 0.05
LINC00339-212ENST00000642072 IGF1RP08069 1367 aa15.36■□□□□ 0.05
LINC00339-212ENST00000642072 FAM69CQ0P6D2 419 aa15.36■□□□□ 0.05
LINC00339-212ENST00000642072 CUL7Q14999 1698 aa15.32■□□□□ 0.04
LINC00339-212ENST00000642072 KIF27Q86VH2 1401 aa15.31■□□□□ 0.04
LINC00339-212ENST00000642072 NPM1P06748 294 aaKnown RBP eCLIP15.3■□□□□ 0.04
LINC00339-212ENST00000642072 KDM6BO15054 1643 aa15.26■□□□□ 0.03
LINC00339-212ENST00000642072 PTPRGP23470 1445 aa15.24■□□□□ 0.03
LINC00339-212ENST00000642072 KDM4FA0A1W2PPD8 638 aa15.23■□□□□ 0.03
LINC00339-212ENST00000642072 CARMIL1Q5VZK9 1371 aa15.22■□□□□ 0.03
LINC00339-212ENST00000642072 ABCC2Q92887 1545 aa15.22■□□□□ 0.03
LINC00339-212ENST00000642072 TNIKQ9UKE5 1360 aa15.2■□□□□ 0.02
LINC00339-212ENST00000642072 TSPOAP1O95153 1857 aa15.19■□□□□ 0.02
LINC00339-212ENST00000642072 UHRF1BP1LA0JNW5 1464 aa15.19■□□□□ 0.02
LINC00339-212ENST00000642072 GLI2P10070 1586 aa15.18■□□□□ 0.02
LINC00339-212ENST00000642072 IQGAP2Q13576 1575 aa15.18■□□□□ 0.02
LINC00339-212ENST00000642072 PPRC1Q5VV67 1664 aaKnown RBP15.18■□□□□ 0.02
LINC00339-212ENST00000642072 CARMIL2Q6F5E8 1435 aa15.17■□□□□ 0.02
LINC00339-212ENST00000642072 ASXL2Q76L83 1435 aa15.17■□□□□ 0.02
LINC00339-212ENST00000642072 DISP1Q96F81 1524 aa15.17■□□□□ 0.02
LINC00339-212ENST00000642072 PLB1Q6P1J6 1458 aa15.15■□□□□ 0.02
LINC00339-212ENST00000642072 UACAQ9BZF9 1416 aa15.14■□□□□ 0.01
LINC00339-212ENST00000642072 KDM5BQ9UGL1 1544 aa15.12■□□□□ 0.01
LINC00339-212ENST00000642072 COL17A1Q9UMD9 1497 aaPredicted RBP15.11■□□□□ 0.01
LINC00339-212ENST00000642072 UGGT2Q9NYU1 1516 aa15.11■□□□□ 0.01
LINC00339-212ENST00000642072 TTBK1Q5TCY1 1321 aaPredicted RBP15.11■□□□□ 0.01
LINC00339-212ENST00000642072 EPRSP07814 1512 aaKnown RBP15.1■□□□□ 0.01
LINC00339-212ENST00000642072 MAP3K4Q9Y6R4 1608 aa15.08■□□□□ 0
LINC00339-212ENST00000642072 RAPGEF2Q9Y4G8 1499 aa15.07■□□□□ 0
LINC00339-212ENST00000642072 ADGRL1O94910 1474 aa15.06■□□□□ 0
LINC00339-212ENST00000642072 KIAA0556O60303 1618 aa15.06■□□□□ 0
LINC00339-212ENST00000642072 ZCCHC11Q5TAX3 1644 aaKnown RBP15.05■□□□□ -0
LINC00339-212ENST00000642072 TEX14Q8IWB6 1497 aa15.01□□□□□ -0.01
LINC00339-212ENST00000642072 WDR7Q9Y4E6 1490 aa15□□□□□ -0.01
LINC00339-212ENST00000642072 ABCA8O94911 1581 aa14.95□□□□□ -0.02
LINC00339-212ENST00000642072 MAGI3Q5TCQ9 1506 aa14.94□□□□□ -0.02
LINC00339-212ENST00000642072 ILDR1Q86SU0 546 aaPredicted RBP14.94□□□□□ -0.02
LINC00339-212ENST00000642072 CTTNBP2Q8WZ74 1663 aa14.93□□□□□ -0.02
LINC00339-212ENST00000642072 GOLGA3Q08378 1498 aa14.92□□□□□ -0.02
LINC00339-212ENST00000642072 HECW2Q9P2P5 1572 aa14.92□□□□□ -0.02
LINC00339-212ENST00000642072 PRXQ9BXM0 1461 aa14.91□□□□□ -0.02
LINC00339-212ENST00000642072 CD109Q6YHK3 1445 aa14.91□□□□□ -0.02
LINC00339-212ENST00000642072 CFAP43Q8NDM7 1665 aa14.9□□□□□ -0.02
LINC00339-212ENST00000642072 ARAP3Q8WWN8 1544 aa14.84□□□□□ -0.03
LINC00339-212ENST00000642072 KCNH8Q96L42 1107 aa14.84□□□□□ -0.03
LINC00339-212ENST00000642072 ATP10BO94823 1461 aa14.81□□□□□ -0.04
LINC00339-212ENST00000642072 KIF21BO75037 1637 aa14.81□□□□□ -0.04
LINC00339-212ENST00000642072 ABCA9Q8IUA7 1624 aa14.78□□□□□ -0.04
LINC00339-212ENST00000642072 SAMD9Q5K651 1589 aa14.77□□□□□ -0.04
LINC00339-212ENST00000642072 PHLDB1Q86UU1 1377 aa14.75□□□□□ -0.05
LINC00339-212ENST00000642072 ARID3CA6NKF2 412 aa14.74□□□□□ -0.05
LINC00339-212ENST00000642072 ADAMTSL3P82987 1691 aa14.73□□□□□ -0.05
LINC00339-212ENST00000642072 NEO1Q92859 1461 aa14.72□□□□□ -0.05
LINC00339-212ENST00000642072 P3H3Q8IVL6 736 aa14.72□□□□□ -0.05
LINC00339-212ENST00000642072 FRMPD1Q5SYB0 1578 aa14.72□□□□□ -0.05
LINC00339-212ENST00000642072 PTPRMP28827 1452 aa14.71□□□□□ -0.05
LINC00339-212ENST00000642072 RAPGEF6Q8TEU7 1601 aa14.7□□□□□ -0.06
LINC00339-212ENST00000642072 NUP153P49790 1475 aaKnown RBP14.7□□□□□ -0.06
LINC00339-212ENST00000642072 RAPGEF3O95398 923 aa14.69□□□□□ -0.06
LINC00339-212ENST00000642072 CSRNP3Q8WYN3 585 aa14.66□□□□□ -0.06
LINC00339-212ENST00000642072 BCORL1Q5H9F3 1711 aa14.66□□□□□ -0.06
LINC00339-212ENST00000642072 FAM9AQ8IZU1 332 aaPredicted RBP14.64□□□□□ -0.07
LINC00339-212ENST00000642072 MADDQ8WXG6 1647 aa14.63□□□□□ -0.07
LINC00339-212ENST00000642072 ARHGEF40Q8TER5 1519 aa14.63□□□□□ -0.07
LINC00339-212ENST00000642072 FHOD3Q2V2M9 1422 aa14.62□□□□□ -0.07
LINC00339-212ENST00000642072 LMTK3Q96Q04 1460 aa14.62□□□□□ -0.07
LINC00339-212ENST00000642072 PCF11O94913 1555 aaKnown RBP14.61□□□□□ -0.07
LINC00339-212ENST00000642072 FBXO41Q8TF61 875 aa14.61□□□□□ -0.07
LINC00339-212ENST00000642072 RICTORQ6R327 1708 aa14.61□□□□□ -0.07
LINC00339-212ENST00000642072 DENND4BO75064 1496 aaPredicted RBP14.59□□□□□ -0.07
LINC00339-212ENST00000642072 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.59□□□□□ -0.07
LINC00339-212ENST00000642072 EEA1Q15075 1411 aa14.58□□□□□ -0.07
LINC00339-212ENST00000642072 AKNAQ7Z591 1439 aa14.58□□□□□ -0.07
LINC00339-212ENST00000642072 ZMYM4Q5VZL5 1548 aa14.58□□□□□ -0.08
LINC00339-212ENST00000642072 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.08
LINC00339-212ENST00000642072 HNRNPUL2Q1KMD3 747 aaKnown RBP14.58□□□□□ -0.08
LINC00339-212ENST00000642072 FANCAO15360 1455 aa14.57□□□□□ -0.08
LINC00339-212ENST00000642072 TTC37Q6PGP7 1564 aa14.57□□□□□ -0.08
LINC00339-212ENST00000642072 SIGLEC1Q9BZZ2 1709 aa14.56□□□□□ -0.08
LINC00339-212ENST00000642072 PLEKHD1A6NEE1 506 aa14.55□□□□□ -0.08
LINC00339-212ENST00000642072 ARID4BQ4LE39 1312 aaPredicted RBP14.55□□□□□ -0.08
LINC00339-212ENST00000642072 EFCAB5A4FU69 1503 aa14.55□□□□□ -0.08
LINC00339-212ENST00000642072 CFAP74Q9C0B2 1584 aa14.55□□□□□ -0.08
LINC00339-212ENST00000642072 RIMS1Q86UR5 1692 aaKnown RBP14.54□□□□□ -0.08
LINC00339-212ENST00000642072 YEATS2Q9ULM3 1422 aa14.53□□□□□ -0.08
LINC00339-212ENST00000642072 ZFYVE16Q7Z3T8 1539 aa14.52□□□□□ -0.08
LINC00339-212ENST00000642072 MAGI2Q86UL8 1455 aa14.52□□□□□ -0.08
LINC00339-212ENST00000642072 RANGAP1P46060 587 aaPredicted RBP14.52□□□□□ -0.09
LINC00339-212ENST00000642072 CDK13Q14004 1512 aaKnown RBP14.51□□□□□ -0.09
LINC00339-212ENST00000642072 POGZQ7Z3K3 1410 aa14.49□□□□□ -0.09
LINC00339-212ENST00000642072 HECW1Q76N89 1606 aa14.49□□□□□ -0.09
LINC00339-212ENST00000642072 PLCH2O75038 1416 aa14.49□□□□□ -0.09
LINC00339-212ENST00000642072 HSPA2P54652 639 aa14.47□□□□□ -0.09
LINC00339-212ENST00000642072 SCAPERQ9BY12 1400 aa14.46□□□□□ -0.09
LINC00339-212ENST00000642072 ARHGEF12Q9NZN5 1544 aa14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms