RNA–Protein interactions for RNA: ENST00000640648.1

NECAP1-227, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 5,166 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-227ENST00000640648 FAM9BQ8IZU0 186 aa10.97□□□□□ -0.65
NECAP1-227ENST00000640648 PPP4R2Q9NY27 417 aa10.97□□□□□ -0.65
NECAP1-227ENST00000640648 CEP162Q5TB80 1403 aa10.96□□□□□ -0.65
NECAP1-227ENST00000640648 IRX6P78412 446 aaPredicted RBP10.96□□□□□ -0.65
NECAP1-227ENST00000640648 UPF2Q9HAU5 1272 aaKnown RBP10.96□□□□□ -0.66
NECAP1-227ENST00000640648 HSP90AA2PQ14568 343 aaPredicted RBP10.95□□□□□ -0.66
NECAP1-227ENST00000640648 CLIP1P30622 1438 aa10.95□□□□□ -0.66
NECAP1-227ENST00000640648 BECN1Q14457 450 aa10.94□□□□□ -0.66
NECAP1-227ENST00000640648 CCDC136Q96JN2 1154 aa10.93□□□□□ -0.66
NECAP1-227ENST00000640648 FBLN2P98095 1184 aa10.93□□□□□ -0.66
NECAP1-227ENST00000640648 ZNF777Q9ULD5 760 aaPredicted RBP10.92□□□□□ -0.66
NECAP1-227ENST00000640648 CHIC2Q9UKJ5 165 aa10.91□□□□□ -0.66
NECAP1-227ENST00000640648 SALL2Q9Y467 1007 aaPredicted RBP10.9□□□□□ -0.66
NECAP1-227ENST00000640648 LAS1LQ9Y4W2 734 aaKnown RBP10.9□□□□□ -0.66
NECAP1-227ENST00000640648 MAP7D2Q96T17 732 aa10.9□□□□□ -0.66
NECAP1-227ENST00000640648 PNNQ9H307 717 aaKnown RBP10.9□□□□□ -0.66
NECAP1-227ENST00000640648 VSIG10Q8N0Z9 540 aa10.89□□□□□ -0.67
NECAP1-227ENST00000640648 MTERF4Q7Z6M4 381 aaKnown RBP10.88□□□□□ -0.67
NECAP1-227ENST00000640648 MRS2Q9HD23 443 aa10.85□□□□□ -0.67
NECAP1-227ENST00000640648 CANXP27824 592 aaKnown RBP10.85□□□□□ -0.67
NECAP1-227ENST00000640648 GOLGA3Q08378 1498 aa10.84□□□□□ -0.67
NECAP1-227ENST00000640648 CCER2I3L3R5 266 aa10.84□□□□□ -0.67
NECAP1-227ENST00000640648 SENP3-EIF4A1A0A087X0R7 540 aa10.83□□□□□ -0.68
NECAP1-227ENST00000640648 TNIKQ9UKE5 1360 aa10.82□□□□□ -0.68
NECAP1-227ENST00000640648 GOLGA6L22H0YM25 854 aa10.81□□□□□ -0.68
NECAP1-227ENST00000640648 RRP9O43818 475 aaKnown RBP10.81□□□□□ -0.68
NECAP1-227ENST00000640648 IPO9Q96P70 1041 aaKnown RBP10.81□□□□□ -0.68
NECAP1-227ENST00000640648 RTN4Q9NQC3 1192 aaKnown RBP10.8□□□□□ -0.68
NECAP1-227ENST00000640648 TMC1Q8TDI8 760 aa10.79□□□□□ -0.68
NECAP1-227ENST00000640648 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.79□□□□□ -0.68
NECAP1-227ENST00000640648 SIN3AQ96ST3 1273 aa10.79□□□□□ -0.68
NECAP1-227ENST00000640648 EEA1Q15075 1411 aa10.78□□□□□ -0.68
NECAP1-227ENST00000640648 RRP7BPQ9NSQ0 103 aa10.78□□□□□ -0.68
NECAP1-227ENST00000640648 WRNQ14191 1432 aaPredicted RBP eCLIP10.78□□□□□ -0.68
NECAP1-227ENST00000640648 CECR2Q9BXF3 1484 aa10.77□□□□□ -0.69
NECAP1-227ENST00000640648 MTUS2Q5JR59 1369 aa10.77□□□□□ -0.69
NECAP1-227ENST00000640648 TAF3Q5VWG9 929 aa10.76□□□□□ -0.69
NECAP1-227ENST00000640648 SOGA1O94964 1423 aa10.76□□□□□ -0.69
NECAP1-227ENST00000640648 FAM43AQ8N2R8 423 aa10.75□□□□□ -0.69
NECAP1-227ENST00000640648 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.75□□□□□ -0.69
NECAP1-227ENST00000640648 KDM2AQ9Y2K7 1162 aa10.75□□□□□ -0.69
NECAP1-227ENST00000640648 RB1CC1Q8TDY2 1594 aa10.74□□□□□ -0.69
NECAP1-227ENST00000640648 EIF4G2P78344 907 aaKnown RBP eCLIP10.74□□□□□ -0.69
NECAP1-227ENST00000640648 TPM2P07951 284 aa10.73□□□□□ -0.69
NECAP1-227ENST00000640648 MSNP26038 577 aaKnown RBP10.73□□□□□ -0.69
NECAP1-227ENST00000640648 ANO8Q9HCE9 1232 aaPredicted RBP10.73□□□□□ -0.69
NECAP1-227ENST00000640648 TIMELESSQ9UNS1 1208 aa10.73□□□□□ -0.69
NECAP1-227ENST00000640648 CALRP27797 417 aaKnown RBP10.72□□□□□ -0.69
NECAP1-227ENST00000640648 TCERG1O14776 1098 aaKnown RBP10.72□□□□□ -0.69
NECAP1-227ENST00000640648 GSE1Q14687 1217 aa10.72□□□□□ -0.69
NECAP1-227ENST00000640648 GOLGA6L3A6NEY3 463 aa10.71□□□□□ -0.69
NECAP1-227ENST00000640648 CEP164Q9UPV0 1460 aa10.71□□□□□ -0.69
NECAP1-227ENST00000640648 PDE4CQ08493 712 aa10.7□□□□□ -0.7
NECAP1-227ENST00000640648 CHAF1AQ13111 956 aaPredicted RBP10.7□□□□□ -0.7
NECAP1-227ENST00000640648 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.69□□□□□ -0.7
NECAP1-227ENST00000640648 ARXQ96QS3 562 aa10.69□□□□□ -0.7
NECAP1-227ENST00000640648 A0A0U1RQG5 324 aaPredicted RBP10.68□□□□□ -0.7
NECAP1-227ENST00000640648 TNNT3P45378 269 aaPredicted RBP10.66□□□□□ -0.7
NECAP1-227ENST00000640648 ABCC8Q09428 1581 aa10.65□□□□□ -0.71
NECAP1-227ENST00000640648 CHGAP10645 457 aaKnown RBP10.65□□□□□ -0.71
NECAP1-227ENST00000640648 KANK4Q5T7N3 995 aaPredicted RBP10.64□□□□□ -0.71
NECAP1-227ENST00000640648 B4GALNT3Q6L9W6 998 aa10.64□□□□□ -0.71
NECAP1-227ENST00000640648 CCDC88BA6NC98 1476 aa10.64□□□□□ -0.71
NECAP1-227ENST00000640648 CCNB3Q8WWL7 1395 aa10.63□□□□□ -0.71
NECAP1-227ENST00000640648 ISY1Q9ULR0 285 aaKnown RBP10.62□□□□□ -0.71
NECAP1-227ENST00000640648 MROH2BQ7Z745 1585 aa10.62□□□□□ -0.71
NECAP1-227ENST00000640648 WDR43Q15061 677 aaKnown RBP eCLIP10.62□□□□□ -0.71
NECAP1-227ENST00000640648 CSPP1Q1MSJ5 1256 aa10.62□□□□□ -0.71
NECAP1-227ENST00000640648 KIF27Q86VH2 1401 aa10.61□□□□□ -0.71
NECAP1-227ENST00000640648 TSPY4P0CV99 314 aa10.61□□□□□ -0.71
NECAP1-227ENST00000640648 TSPY10P0CW01 314 aa10.61□□□□□ -0.71
NECAP1-227ENST00000640648 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.61□□□□□ -0.71
NECAP1-227ENST00000640648 HMGB1P09429 215 aaKnown RBP10.6□□□□□ -0.71
NECAP1-227ENST00000640648 TAF7LQ5H9L4 462 aa10.6□□□□□ -0.71
NECAP1-227ENST00000640648 DNTTIP2Q5QJE6 756 aaKnown RBP10.6□□□□□ -0.71
NECAP1-227ENST00000640648 TSPYL1Q9H0U9 437 aa10.59□□□□□ -0.71
NECAP1-227ENST00000640648 VPS8Q8N3P4 1428 aa10.59□□□□□ -0.71
NECAP1-227ENST00000640648 RGL3Q3MIN7 710 aa10.59□□□□□ -0.71
NECAP1-227ENST00000640648 MS4A1P11836 297 aa10.59□□□□□ -0.71
NECAP1-227ENST00000640648 BAZ1AQ9NRL2 1556 aaPredicted RBP10.59□□□□□ -0.71
NECAP1-227ENST00000640648 BAZ1BQ9UIG0 1483 aaKnown RBP10.58□□□□□ -0.72
NECAP1-227ENST00000640648 PTMAP06454 111 aaKnown RBP10.58□□□□□ -0.72
NECAP1-227ENST00000640648 GOLGA6L6A8MZA4 724 aa10.58□□□□□ -0.72
NECAP1-227ENST00000640648 CCDC66A2RUB6 948 aa10.57□□□□□ -0.72
NECAP1-227ENST00000640648 CFAP44Q96MT7 982 aa10.57□□□□□ -0.72
NECAP1-227ENST00000640648 NACADO15069 1562 aa10.57□□□□□ -0.72
NECAP1-227ENST00000640648 MYH16Q9H6N6 1097 aa10.57□□□□□ -0.72
NECAP1-227ENST00000640648 KCNH8Q96L42 1107 aa10.56□□□□□ -0.72
NECAP1-227ENST00000640648 APPP05067 770 aa10.55□□□□□ -0.72
NECAP1-227ENST00000640648 GOLGA6L1Q8N7Z2 621 aa10.54□□□□□ -0.72
NECAP1-227ENST00000640648 SKOR2Q2VWA4 1001 aaPredicted RBP10.54□□□□□ -0.72
NECAP1-227ENST00000640648 PDIA4P13667 645 aaKnown RBP10.53□□□□□ -0.72
NECAP1-227ENST00000640648 KIAA2012Q0VF49 1180 aa10.53□□□□□ -0.72
NECAP1-227ENST00000640648 GBP4Q96PP9 640 aa10.53□□□□□ -0.72
NECAP1-227ENST00000640648 CARD11Q9BXL7 1154 aa10.53□□□□□ -0.72
NECAP1-227ENST00000640648 SENP3Q9H4L4 574 aaPredicted RBP10.53□□□□□ -0.72
NECAP1-227ENST00000640648 PDCL3Q9H2J4 239 aa10.53□□□□□ -0.72
NECAP1-227ENST00000640648 RAB3GAP2Q9H2M9 1393 aa10.52□□□□□ -0.73
NECAP1-227ENST00000640648 C11orf95C9JLR9 678 aaPredicted RBP10.52□□□□□ -0.73
NECAP1-227ENST00000640648 NRDCO43847 1150 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms