RNA–Protein interactions for RNA: ENST00000639841.1

NECAP1-220, Transcript of NECAP endocytosis associated 1, humanhuman

TSL 5

Gene NECAP1, Length 1,982 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECAP1-220ENST00000639841 APLP2Q06481 763 aa12.63□□□□□ -0.39
NECAP1-220ENST00000639841 SPOCK2Q92563 424 aa12.59□□□□□ -0.39
NECAP1-220ENST00000639841 CHGAP10645 457 aaKnown RBP12.58□□□□□ -0.4
NECAP1-220ENST00000639841 BRPF1P55201 1214 aaPredicted RBP12.58□□□□□ -0.4
NECAP1-220ENST00000639841 MKRN4PQ13434 485 aaPredicted RBP12.53□□□□□ -0.4
NECAP1-220ENST00000639841 TRHP20396 242 aaPredicted RBP12.49□□□□□ -0.41
NECAP1-220ENST00000639841 ZNF219Q9P2Y4 722 aaPredicted RBP12.48□□□□□ -0.41
NECAP1-220ENST00000639841 CUX2O14529 1486 aa12.46□□□□□ -0.41
NECAP1-220ENST00000639841 SAMD1Q6SPF0 538 aaPredicted RBP12.45□□□□□ -0.42
NECAP1-220ENST00000639841 HS6ST3Q8IZP7 471 aa12.37□□□□□ -0.43
NECAP1-220ENST00000639841 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.36□□□□□ -0.43
NECAP1-220ENST00000639841 HNRNPUL2Q1KMD3 747 aaKnown RBP12.36□□□□□ -0.43
NECAP1-220ENST00000639841 NCAPD3P42695 1498 aa12.35□□□□□ -0.43
NECAP1-220ENST00000639841 LMOD2Q6P5Q4 547 aa12.34□□□□□ -0.43
NECAP1-220ENST00000639841 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.34□□□□□ -0.43
NECAP1-220ENST00000639841 NKX1-1Q15270 411 aaPredicted RBP12.32□□□□□ -0.44
NECAP1-220ENST00000639841 ERCC6Q03468 1493 aa12.3□□□□□ -0.44
NECAP1-220ENST00000639841 SMARCA2P51531 1590 aa12.3□□□□□ -0.44
NECAP1-220ENST00000639841 HMGXB3Q12766 1538 aa12.3□□□□□ -0.44
NECAP1-220ENST00000639841 NEUROD2Q15784 382 aa12.3□□□□□ -0.44
NECAP1-220ENST00000639841 GTPBP6O43824 516 aaPredicted RBP12.27□□□□□ -0.44
NECAP1-220ENST00000639841 U3KPZ7 1027 aaPredicted RBP12.27□□□□□ -0.44
NECAP1-220ENST00000639841 ZMYND15Q9H091 742 aa12.27□□□□□ -0.45
NECAP1-220ENST00000639841 RSPH6AQ9H0K4 717 aa12.23□□□□□ -0.45
NECAP1-220ENST00000639841 ATAD2BQ9ULI0 1458 aa12.22□□□□□ -0.45
NECAP1-220ENST00000639841 PELP1Q8IZL8 1130 aaKnown RBP12.22□□□□□ -0.45
NECAP1-220ENST00000639841 C1orf115Q9H7X2 142 aa12.22□□□□□ -0.45
NECAP1-220ENST00000639841 ARID3AQ99856 593 aa12.21□□□□□ -0.46
NECAP1-220ENST00000639841 SMARCA4P51532 1647 aa12.2□□□□□ -0.46
NECAP1-220ENST00000639841 LOC105371045A0A1W2PR82 267 aa12.19□□□□□ -0.46
NECAP1-220ENST00000639841 CCDC9Q9Y3X0 531 aaKnown RBP12.18□□□□□ -0.46
NECAP1-220ENST00000639841 BAZ1AQ9NRL2 1556 aaPredicted RBP12.17□□□□□ -0.46
NECAP1-220ENST00000639841 PEG3Q9GZU2 1588 aa12.16□□□□□ -0.46
NECAP1-220ENST00000639841 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.16□□□□□ -0.46
NECAP1-220ENST00000639841 CIZ1Q9ULV3 898 aaPredicted RBP12.16□□□□□ -0.46
NECAP1-220ENST00000639841 LAMC3Q9Y6N6 1575 aa12.16□□□□□ -0.46
NECAP1-220ENST00000639841 RNF25Q96BH1 459 aaPredicted RBP12.15□□□□□ -0.46
NECAP1-220ENST00000639841 P3H3Q8IVL6 736 aa12.14□□□□□ -0.47
NECAP1-220ENST00000639841 SLC24A3Q9HC58 644 aa12.14□□□□□ -0.47
NECAP1-220ENST00000639841 ZC3H15Q8WU90 426 aaKnown RBP12.14□□□□□ -0.47
NECAP1-220ENST00000639841 BAZ1BQ9UIG0 1483 aaKnown RBP12.13□□□□□ -0.47
NECAP1-220ENST00000639841 NECTIN2Q92692 538 aa12.12□□□□□ -0.47
NECAP1-220ENST00000639841 KCNV2Q8TDN2 545 aa12.1□□□□□ -0.47
NECAP1-220ENST00000639841 THOC2Q8NI27 1593 aaKnown RBP12.1□□□□□ -0.47
NECAP1-220ENST00000639841 ZBTB7CA1YPR0 619 aa12.08□□□□□ -0.48
NECAP1-220ENST00000639841 PLCD3Q8N3E9 789 aa12.08□□□□□ -0.48
NECAP1-220ENST00000639841 PDS5BQ9NTI5 1447 aa12.07□□□□□ -0.48
NECAP1-220ENST00000639841 TTBK1Q5TCY1 1321 aaPredicted RBP12.05□□□□□ -0.48
NECAP1-220ENST00000639841 PDIA4P13667 645 aaKnown RBP12.02□□□□□ -0.49
NECAP1-220ENST00000639841 NESP48681 1621 aa12.01□□□□□ -0.49
NECAP1-220ENST00000639841 ARID3CA6NKF2 412 aa11.99□□□□□ -0.49
NECAP1-220ENST00000639841 TRIM41Q8WV44 630 aa11.99□□□□□ -0.49
NECAP1-220ENST00000639841 STAG3Q9UJ98 1225 aa11.99□□□□□ -0.49
NECAP1-220ENST00000639841 KIF21AQ7Z4S6 1674 aa11.97□□□□□ -0.49
NECAP1-220ENST00000639841 MYT1Q01538 1121 aa11.97□□□□□ -0.49
NECAP1-220ENST00000639841 MRC2Q9UBG0 1479 aa11.95□□□□□ -0.5
NECAP1-220ENST00000639841 MIER1Q8N108 512 aa11.94□□□□□ -0.5
NECAP1-220ENST00000639841 IGSF3O75054 1194 aa11.94□□□□□ -0.5
NECAP1-220ENST00000639841 WDR62O43379 1518 aa11.93□□□□□ -0.5
NECAP1-220ENST00000639841 CADPSQ9ULU8 1353 aa11.92□□□□□ -0.5
NECAP1-220ENST00000639841 APBB1O00213 710 aa11.92□□□□□ -0.5
NECAP1-220ENST00000639841 MROH2BQ7Z745 1585 aa11.89□□□□□ -0.51
NECAP1-220ENST00000639841 ZMYND10O75800 440 aa11.88□□□□□ -0.51
NECAP1-220ENST00000639841 GPBP1L1Q9HC44 474 aaPredicted RBP11.88□□□□□ -0.51
NECAP1-220ENST00000639841 CADPS2Q86UW7 1296 aa11.87□□□□□ -0.51
NECAP1-220ENST00000639841 STK25O00506 426 aa11.87□□□□□ -0.51
NECAP1-220ENST00000639841 IL27Q8NEV9 243 aa11.86□□□□□ -0.51
NECAP1-220ENST00000639841 CEP164Q9UPV0 1460 aa11.86□□□□□ -0.51
NECAP1-220ENST00000639841 RIOK3O14730 519 aaKnown RBP11.85□□□□□ -0.51
NECAP1-220ENST00000639841 MKRN3Q13064 507 aaKnown RBP11.85□□□□□ -0.51
NECAP1-220ENST00000639841 POLA2Q14181 598 aa11.84□□□□□ -0.51
NECAP1-220ENST00000639841 KCTD17Q8N5Z5 321 aa11.83□□□□□ -0.52
NECAP1-220ENST00000639841 WDR70Q9NW82 654 aa11.82□□□□□ -0.52
NECAP1-220ENST00000639841 TESPA1A2RU30 521 aaPredicted RBP11.79□□□□□ -0.52
NECAP1-220ENST00000639841 RGS22Q8NE09 1264 aa11.79□□□□□ -0.52
NECAP1-220ENST00000639841 SEMA3EO15041 775 aa11.78□□□□□ -0.52
NECAP1-220ENST00000639841 EIF5BO60841 1220 aaKnown RBP11.78□□□□□ -0.52
NECAP1-220ENST00000639841 SP7Q8TDD2 431 aaPredicted RBP11.78□□□□□ -0.52
NECAP1-220ENST00000639841 FANCD2Q9BXW9 1451 aa11.77□□□□□ -0.53
NECAP1-220ENST00000639841 CFTRP13569 1480 aa11.76□□□□□ -0.53
NECAP1-220ENST00000639841 RAD21O60216 631 aa11.76□□□□□ -0.53
NECAP1-220ENST00000639841 CCDC82Q8N4S0 544 aa11.76□□□□□ -0.53
NECAP1-220ENST00000639841 RYDENQ9NUL5 291 aaKnown RBP11.76□□□□□ -0.53
NECAP1-220ENST00000639841 PRDM2Q13029 1718 aa11.75□□□□□ -0.53
NECAP1-220ENST00000639841 BARGINQ6ZT62 677 aa11.74□□□□□ -0.53
NECAP1-220ENST00000639841 ARHGEF1Q92888 912 aaKnown RBP11.74□□□□□ -0.53
NECAP1-220ENST00000639841 ZBTB47Q9UFB7 747 aaPredicted RBP11.74□□□□□ -0.53
NECAP1-220ENST00000639841 WIZO95785 1651 aa11.73□□□□□ -0.53
NECAP1-220ENST00000639841 OSCARQ8IYS5 282 aa11.73□□□□□ -0.53
NECAP1-220ENST00000639841 KDM4CQ9H3R0 1056 aa11.73□□□□□ -0.53
NECAP1-220ENST00000639841 VGFO15240 615 aaPredicted RBP11.72□□□□□ -0.53
NECAP1-220ENST00000639841 TOP2AP11388 1531 aaKnown RBP11.71□□□□□ -0.53
NECAP1-220ENST00000639841 GSE1Q14687 1217 aa11.7□□□□□ -0.54
NECAP1-220ENST00000639841 TRAIPQ9BWF2 469 aa11.7□□□□□ -0.54
NECAP1-220ENST00000639841 BCL11BQ9C0K0 894 aaPredicted RBP11.7□□□□□ -0.54
NECAP1-220ENST00000639841 MTMR7Q9Y216 660 aa11.7□□□□□ -0.54
NECAP1-220ENST00000639841 STK24Q9Y6E0 443 aa11.68□□□□□ -0.54
NECAP1-220ENST00000639841 DSG3P32926 999 aa11.68□□□□□ -0.54
NECAP1-220ENST00000639841 ZNF428Q96B54 188 aa11.67□□□□□ -0.54
NECAP1-220ENST00000639841 AK7Q96M32 723 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms