RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 RUSC2Q8N2Y8 1516 aa26.63■■□□□ 1.85
SYNE2-228ENST00000639659 NPM1P06748 294 aaKnown RBP eCLIP26.54■■□□□ 1.84
SYNE2-228ENST00000639659 FAM69CQ0P6D2 419 aa26.51■■□□□ 1.83
SYNE2-228ENST00000639659 ADCY10Q96PN6 1610 aa26.47■■□□□ 1.83
SYNE2-228ENST00000639659 ABCC10Q5T3U5 1492 aa26.45■■□□□ 1.82
SYNE2-228ENST00000639659 TTBK1Q5TCY1 1321 aaPredicted RBP26.42■■□□□ 1.82
SYNE2-228ENST00000639659 KIF27Q86VH2 1401 aa26.42■■□□□ 1.82
SYNE2-228ENST00000639659 MAPKBP1O60336 1514 aa26.42■■□□□ 1.82
SYNE2-228ENST00000639659 DIP2BQ9P265 1576 aa26.41■■□□□ 1.82
SYNE2-228ENST00000639659 CUL7Q14999 1698 aa26.41■■□□□ 1.82
SYNE2-228ENST00000639659 KIAA0586Q9BVV6 1533 aa26.4■■□□□ 1.82
SYNE2-228ENST00000639659 IGF1RP08069 1367 aa26.38■■□□□ 1.81
SYNE2-228ENST00000639659 TSPOAP1O95153 1857 aa26.36■■□□□ 1.81
SYNE2-228ENST00000639659 KDM6BO15054 1643 aa26.31■■□□□ 1.8
SYNE2-228ENST00000639659 PTPRGP23470 1445 aa26.27■■□□□ 1.8
SYNE2-228ENST00000639659 CARMIL1Q5VZK9 1371 aa26.26■■□□□ 1.79
SYNE2-228ENST00000639659 CARMIL2Q6F5E8 1435 aa26.21■■□□□ 1.79
SYNE2-228ENST00000639659 TNIKQ9UKE5 1360 aa26.19■■□□□ 1.78
SYNE2-228ENST00000639659 IQGAP2Q13576 1575 aa26.18■■□□□ 1.78
SYNE2-228ENST00000639659 ABCC2Q92887 1545 aa26.14■■□□□ 1.78
SYNE2-228ENST00000639659 ASXL2Q76L83 1435 aa26.11■■□□□ 1.77
SYNE2-228ENST00000639659 KDM4FA0A1W2PPD8 638 aa26.1■■□□□ 1.77
SYNE2-228ENST00000639659 PLB1Q6P1J6 1458 aa26.06■■□□□ 1.76
SYNE2-228ENST00000639659 UACAQ9BZF9 1416 aa26.05■■□□□ 1.76
SYNE2-228ENST00000639659 DISP1Q96F81 1524 aa26.04■■□□□ 1.76
SYNE2-228ENST00000639659 PPRC1Q5VV67 1664 aaKnown RBP26.03■■□□□ 1.76
SYNE2-228ENST00000639659 UHRF1BP1LA0JNW5 1464 aa26.01■■□□□ 1.75
SYNE2-228ENST00000639659 GLI2P10070 1586 aa26■■□□□ 1.75
SYNE2-228ENST00000639659 RAPGEF2Q9Y4G8 1499 aa25.99■■□□□ 1.75
SYNE2-228ENST00000639659 ZCCHC11Q5TAX3 1644 aaKnown RBP25.96■■□□□ 1.75
SYNE2-228ENST00000639659 KIAA0556O60303 1618 aa25.95■■□□□ 1.74
SYNE2-228ENST00000639659 EPRSP07814 1512 aaKnown RBP25.93■■□□□ 1.74
SYNE2-228ENST00000639659 UGGT2Q9NYU1 1516 aa25.93■■□□□ 1.74
SYNE2-228ENST00000639659 KDM5BQ9UGL1 1544 aa25.92■■□□□ 1.74
SYNE2-228ENST00000639659 MAP3K4Q9Y6R4 1608 aa25.9■■□□□ 1.74
SYNE2-228ENST00000639659 ADGRL1O94910 1474 aa25.89■■□□□ 1.73
SYNE2-228ENST00000639659 TEX14Q8IWB6 1497 aa25.86■■□□□ 1.73
SYNE2-228ENST00000639659 CTTNBP2Q8WZ74 1663 aa25.85■■□□□ 1.73
SYNE2-228ENST00000639659 COL17A1Q9UMD9 1497 aaPredicted RBP25.85■■□□□ 1.73
SYNE2-228ENST00000639659 WDR7Q9Y4E6 1490 aa25.81■■□□□ 1.72
SYNE2-228ENST00000639659 KCNH8Q96L42 1107 aa25.75■■□□□ 1.71
SYNE2-228ENST00000639659 GOLGA3Q08378 1498 aa25.74■■□□□ 1.71
SYNE2-228ENST00000639659 ARID3CA6NKF2 412 aa25.69■■□□□ 1.7
SYNE2-228ENST00000639659 CD109Q6YHK3 1445 aa25.69■■□□□ 1.7
SYNE2-228ENST00000639659 ABCA8O94911 1581 aa25.69■■□□□ 1.7
SYNE2-228ENST00000639659 CFAP43Q8NDM7 1665 aa25.68■■□□□ 1.7
SYNE2-228ENST00000639659 ILDR1Q86SU0 546 aaPredicted RBP25.65■■□□□ 1.7
SYNE2-228ENST00000639659 HECW2Q9P2P5 1572 aa25.63■■□□□ 1.69
SYNE2-228ENST00000639659 P3H3Q8IVL6 736 aa25.62■■□□□ 1.69
SYNE2-228ENST00000639659 MAGI3Q5TCQ9 1506 aa25.61■■□□□ 1.69
SYNE2-228ENST00000639659 PRXQ9BXM0 1461 aa25.6■■□□□ 1.69
SYNE2-228ENST00000639659 FAM9AQ8IZU1 332 aaPredicted RBP25.56■■□□□ 1.68
SYNE2-228ENST00000639659 KIF21BO75037 1637 aa25.55■■□□□ 1.68
SYNE2-228ENST00000639659 ATP10BO94823 1461 aa25.47■■□□□ 1.67
SYNE2-228ENST00000639659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.46■■□□□ 1.67
SYNE2-228ENST00000639659 RANGAP1P46060 587 aaPredicted RBP25.46■■□□□ 1.67
SYNE2-228ENST00000639659 HNRNPUL2Q1KMD3 747 aaKnown RBP25.46■■□□□ 1.67
SYNE2-228ENST00000639659 ARAP3Q8WWN8 1544 aa25.42■■□□□ 1.66
SYNE2-228ENST00000639659 RAPGEF6Q8TEU7 1601 aa25.41■■□□□ 1.66
SYNE2-228ENST00000639659 ABCA9Q8IUA7 1624 aa25.41■■□□□ 1.66
SYNE2-228ENST00000639659 SAMD9Q5K651 1589 aa25.39■■□□□ 1.66
SYNE2-228ENST00000639659 CSRNP3Q8WYN3 585 aa25.37■■□□□ 1.65
SYNE2-228ENST00000639659 RAPGEF3O95398 923 aa25.36■■□□□ 1.65
SYNE2-228ENST00000639659 ARID4BQ4LE39 1312 aaPredicted RBP25.31■■□□□ 1.64
SYNE2-228ENST00000639659 FHOD3Q2V2M9 1422 aa25.3■■□□□ 1.64
SYNE2-228ENST00000639659 PHLDB1Q86UU1 1377 aa25.3■■□□□ 1.64
SYNE2-228ENST00000639659 NEO1Q92859 1461 aa25.29■■□□□ 1.64
SYNE2-228ENST00000639659 NUP153P49790 1475 aaKnown RBP25.28■■□□□ 1.64
SYNE2-228ENST00000639659 PTPRMP28827 1452 aa25.27■■□□□ 1.64
SYNE2-228ENST00000639659 ADAMTSL3P82987 1691 aa25.26■■□□□ 1.63
SYNE2-228ENST00000639659 FRMPD1Q5SYB0 1578 aa25.26■■□□□ 1.63
SYNE2-228ENST00000639659 MADDQ8WXG6 1647 aa25.22■■□□□ 1.63
SYNE2-228ENST00000639659 BCORL1Q5H9F3 1711 aa25.21■■□□□ 1.63
SYNE2-228ENST00000639659 PLEKHD1A6NEE1 506 aa25.19■■□□□ 1.62
SYNE2-228ENST00000639659 EEA1Q15075 1411 aa25.18■■□□□ 1.62
SYNE2-228ENST00000639659 PLPPR3Q6T4P5 718 aa25.17■■□□□ 1.62
SYNE2-228ENST00000639659 DENND4BO75064 1496 aaPredicted RBP25.16■■□□□ 1.62
SYNE2-228ENST00000639659 ARHGEF40Q8TER5 1519 aa25.16■■□□□ 1.62
SYNE2-228ENST00000639659 RIMS1Q86UR5 1692 aaKnown RBP25.14■■□□□ 1.62
SYNE2-228ENST00000639659 EHMT2Q96KQ7 1210 aa25.14■■□□□ 1.62
SYNE2-228ENST00000639659 RICTORQ6R327 1708 aa25.13■■□□□ 1.61
SYNE2-228ENST00000639659 FANCAO15360 1455 aa25.13■■□□□ 1.61
SYNE2-228ENST00000639659 CFAP74Q9C0B2 1584 aa25.13■■□□□ 1.61
SYNE2-228ENST00000639659 AKNAQ7Z591 1439 aa25.12■■□□□ 1.61
SYNE2-228ENST00000639659 TTC37Q6PGP7 1564 aa25.12■■□□□ 1.61
SYNE2-228ENST00000639659 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.12■■□□□ 1.61
SYNE2-228ENST00000639659 PCF11O94913 1555 aaKnown RBP25.1■■□□□ 1.61
SYNE2-228ENST00000639659 EFCAB5A4FU69 1503 aa25.09■■□□□ 1.61
SYNE2-228ENST00000639659 CDK13Q14004 1512 aaKnown RBP25.08■■□□□ 1.61
SYNE2-228ENST00000639659 FBXO41Q8TF61 875 aa25.07■■□□□ 1.6
SYNE2-228ENST00000639659 ATP1B4Q9UN42 357 aaPredicted RBP25.07■■□□□ 1.6
SYNE2-228ENST00000639659 LMTK3Q96Q04 1460 aa25.04■■□□□ 1.6
SYNE2-228ENST00000639659 ZFYVE16Q7Z3T8 1539 aa25.04■■□□□ 1.6
SYNE2-228ENST00000639659 MLECQ14165 292 aa25.03■■□□□ 1.6
SYNE2-228ENST00000639659 YEATS2Q9ULM3 1422 aa25.03■■□□□ 1.6
SYNE2-228ENST00000639659 POGZQ7Z3K3 1410 aa25.02■■□□□ 1.6
SYNE2-228ENST00000639659 ZMYM4Q5VZL5 1548 aa25.01■■□□□ 1.59
SYNE2-228ENST00000639659 HSPA2P54652 639 aa24.99■■□□□ 1.59
SYNE2-228ENST00000639659 SIGLEC1Q9BZZ2 1709 aa24.99■■□□□ 1.59
SYNE2-228ENST00000639659 HECW1Q76N89 1606 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47.4 ms