RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 MAPKBP1O60336 1514 aa20.27■□□□□ 0.84
CLN3-257ENST00000637110 KDM6BO15054 1643 aa20.27■□□□□ 0.84
CLN3-257ENST00000637110 KDM4FA0A1W2PPD8 638 aa20.27■□□□□ 0.84
CLN3-257ENST00000637110 DIP2BQ9P265 1576 aa20.25■□□□□ 0.83
CLN3-257ENST00000637110 ERICH3Q5RHP9 1530 aa20.24■□□□□ 0.83
CLN3-257ENST00000637110 JPH4Q96JJ6 628 aa20.23■□□□□ 0.83
CLN3-257ENST00000637110 TOP2BQ02880 1626 aa20.21■□□□□ 0.83
CLN3-257ENST00000637110 BIVM-ERCC5R4GMW8 1640 aa20.2■□□□□ 0.82
CLN3-257ENST00000637110 TSPOAP1O95153 1857 aa20.17■□□□□ 0.82
CLN3-257ENST00000637110 ADCY10Q96PN6 1610 aa20.15■□□□□ 0.82
CLN3-257ENST00000637110 RUSC2Q8N2Y8 1516 aa20.13■□□□□ 0.81
CLN3-257ENST00000637110 ADGRL1O94910 1474 aa20.01■□□□□ 0.79
CLN3-257ENST00000637110 KIAA0586Q9BVV6 1533 aa19.97■□□□□ 0.79
CLN3-257ENST00000637110 HECW2Q9P2P5 1572 aa19.95■□□□□ 0.78
CLN3-257ENST00000637110 GLI2P10070 1586 aa19.92■□□□□ 0.78
CLN3-257ENST00000637110 PPRC1Q5VV67 1664 aaKnown RBP19.91■□□□□ 0.78
CLN3-257ENST00000637110 PTPRGP23470 1445 aa19.91■□□□□ 0.78
CLN3-257ENST00000637110 PLB1Q6P1J6 1458 aa19.91■□□□□ 0.78
CLN3-257ENST00000637110 KIF27Q86VH2 1401 aa19.9■□□□□ 0.78
CLN3-257ENST00000637110 ABCC2Q92887 1545 aa19.9■□□□□ 0.78
CLN3-257ENST00000637110 ASXL2Q76L83 1435 aa19.88■□□□□ 0.77
CLN3-257ENST00000637110 CUL7Q14999 1698 aa19.85■□□□□ 0.77
CLN3-257ENST00000637110 CARMIL2Q6F5E8 1435 aa19.84■□□□□ 0.77
CLN3-257ENST00000637110 TNIKQ9UKE5 1360 aa19.83■□□□□ 0.76
CLN3-257ENST00000637110 TTBK1Q5TCY1 1321 aaPredicted RBP19.82■□□□□ 0.76
CLN3-257ENST00000637110 TEX14Q8IWB6 1497 aa19.82■□□□□ 0.76
CLN3-257ENST00000637110 IGF1RP08069 1367 aa19.82■□□□□ 0.76
CLN3-257ENST00000637110 MAP3K4Q9Y6R4 1608 aa19.79■□□□□ 0.76
CLN3-257ENST00000637110 UHRF1BP1LA0JNW5 1464 aa19.79■□□□□ 0.76
CLN3-257ENST00000637110 COL17A1Q9UMD9 1497 aaPredicted RBP19.78■□□□□ 0.76
CLN3-257ENST00000637110 FBXO41Q8TF61 875 aa19.75■□□□□ 0.75
CLN3-257ENST00000637110 EPRSP07814 1512 aaKnown RBP19.75■□□□□ 0.75
CLN3-257ENST00000637110 UACAQ9BZF9 1416 aa19.74■□□□□ 0.75
CLN3-257ENST00000637110 CARMIL1Q5VZK9 1371 aa19.73■□□□□ 0.75
CLN3-257ENST00000637110 IQGAP2Q13576 1575 aa19.7■□□□□ 0.74
CLN3-257ENST00000637110 KDM5BQ9UGL1 1544 aa19.69■□□□□ 0.74
CLN3-257ENST00000637110 ZCCHC11Q5TAX3 1644 aaKnown RBP19.66■□□□□ 0.74
CLN3-257ENST00000637110 DISP1Q96F81 1524 aa19.61■□□□□ 0.73
CLN3-257ENST00000637110 WDR7Q9Y4E6 1490 aa19.6■□□□□ 0.73
CLN3-257ENST00000637110 RAPGEF2Q9Y4G8 1499 aa19.57■□□□□ 0.72
CLN3-257ENST00000637110 MAGI3Q5TCQ9 1506 aa19.56■□□□□ 0.72
CLN3-257ENST00000637110 CFAP43Q8NDM7 1665 aa19.56■□□□□ 0.72
CLN3-257ENST00000637110 KIF21BO75037 1637 aa19.54■□□□□ 0.72
CLN3-257ENST00000637110 CD109Q6YHK3 1445 aa19.54■□□□□ 0.72
CLN3-257ENST00000637110 UGGT2Q9NYU1 1516 aa19.53■□□□□ 0.72
CLN3-257ENST00000637110 KIAA0556O60303 1618 aa19.51■□□□□ 0.71
CLN3-257ENST00000637110 PTPRMP28827 1452 aa19.46■□□□□ 0.71
CLN3-257ENST00000637110 KCNH8Q96L42 1107 aa19.45■□□□□ 0.7
CLN3-257ENST00000637110 CSRNP3Q8WYN3 585 aa19.44■□□□□ 0.7
CLN3-257ENST00000637110 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
CLN3-257ENST00000637110 LMTK3Q96Q04 1460 aa19.42■□□□□ 0.7
CLN3-257ENST00000637110 ARAP3Q8WWN8 1544 aa19.42■□□□□ 0.7
CLN3-257ENST00000637110 ADAMTSL3P82987 1691 aa19.42■□□□□ 0.7
CLN3-257ENST00000637110 PRXQ9BXM0 1461 aa19.4■□□□□ 0.7
CLN3-257ENST00000637110 PCF11O94913 1555 aaKnown RBP19.4■□□□□ 0.7
CLN3-257ENST00000637110 GOLGA3Q08378 1498 aa19.37■□□□□ 0.69
CLN3-257ENST00000637110 CTTNBP2Q8WZ74 1663 aa19.36■□□□□ 0.69
CLN3-257ENST00000637110 ABCA8O94911 1581 aa19.36■□□□□ 0.69
CLN3-257ENST00000637110 PHLDB1Q86UU1 1377 aa19.36■□□□□ 0.69
CLN3-257ENST00000637110 EEA1Q15075 1411 aa19.35■□□□□ 0.69
CLN3-257ENST00000637110 CHIC1Q5VXU3 224 aa19.34■□□□□ 0.69
CLN3-257ENST00000637110 BCORL1Q5H9F3 1711 aa19.34■□□□□ 0.69
CLN3-257ENST00000637110 ARID4BQ4LE39 1312 aaPredicted RBP19.3■□□□□ 0.68
CLN3-257ENST00000637110 MADDQ8WXG6 1647 aa19.3■□□□□ 0.68
CLN3-257ENST00000637110 RANGAP1P46060 587 aaPredicted RBP19.27■□□□□ 0.68
CLN3-257ENST00000637110 ABCA9Q8IUA7 1624 aa19.26■□□□□ 0.67
CLN3-257ENST00000637110 P3H3Q8IVL6 736 aa19.26■□□□□ 0.67
CLN3-257ENST00000637110 NEO1Q92859 1461 aa19.25■□□□□ 0.67
CLN3-257ENST00000637110 RAPGEF3O95398 923 aa19.25■□□□□ 0.67
CLN3-257ENST00000637110 EHMT2Q96KQ7 1210 aa19.25■□□□□ 0.67
CLN3-257ENST00000637110 RIMS1Q86UR5 1692 aaKnown RBP19.24■□□□□ 0.67
CLN3-257ENST00000637110 CERKQ8TCT0 537 aa19.23■□□□□ 0.67
CLN3-257ENST00000637110 SOCS7O14512 581 aa19.2■□□□□ 0.66
CLN3-257ENST00000637110 DISP3Q9P2K9 1392 aa19.19■□□□□ 0.66
CLN3-257ENST00000637110 FRMPD1Q5SYB0 1578 aa19.19■□□□□ 0.66
CLN3-257ENST00000637110 ATP10BO94823 1461 aa19.18■□□□□ 0.66
CLN3-257ENST00000637110 HSPA2P54652 639 aa19.18■□□□□ 0.66
CLN3-257ENST00000637110 ARHGEF40Q8TER5 1519 aa19.18■□□□□ 0.66
CLN3-257ENST00000637110 ARID3CA6NKF2 412 aa19.17■□□□□ 0.66
CLN3-257ENST00000637110 UBTFP17480 764 aaKnown RBP19.16■□□□□ 0.66
CLN3-257ENST00000637110 POGZQ7Z3K3 1410 aa19.16■□□□□ 0.66
CLN3-257ENST00000637110 FANCAO15360 1455 aa19.12■□□□□ 0.65
CLN3-257ENST00000637110 ILDR2Q71H61 639 aa19.12■□□□□ 0.65
CLN3-257ENST00000637110 PLPPR3Q6T4P5 718 aa19.11■□□□□ 0.65
CLN3-257ENST00000637110 DENND4BO75064 1496 aaPredicted RBP19.09■□□□□ 0.65
CLN3-257ENST00000637110 AKNAQ7Z591 1439 aa19.09■□□□□ 0.65
CLN3-257ENST00000637110 RICTORQ6R327 1708 aa19.09■□□□□ 0.65
CLN3-257ENST00000637110 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.08■□□□□ 0.64
CLN3-257ENST00000637110 HNRNPUL2Q1KMD3 747 aaKnown RBP19.08■□□□□ 0.64
CLN3-257ENST00000637110 SAMD9Q5K651 1589 aa19.07■□□□□ 0.64
CLN3-257ENST00000637110 CFAP74Q9C0B2 1584 aa19.07■□□□□ 0.64
CLN3-257ENST00000637110 RAPGEF6Q8TEU7 1601 aa19.06■□□□□ 0.64
CLN3-257ENST00000637110 FHOD3Q2V2M9 1422 aa19.06■□□□□ 0.64
CLN3-257ENST00000637110 FER1L4A9Z1Z3 1794 aa19.06■□□□□ 0.64
CLN3-257ENST00000637110 EFCAB5A4FU69 1503 aa19.05■□□□□ 0.64
CLN3-257ENST00000637110 SPATA31D1Q6ZQQ2 1576 aa19.03■□□□□ 0.64
CLN3-257ENST00000637110 ZMYM4Q5VZL5 1548 aa19.03■□□□□ 0.64
CLN3-257ENST00000637110 ZFYVE16Q7Z3T8 1539 aa19.03■□□□□ 0.64
CLN3-257ENST00000637110 TTC37Q6PGP7 1564 aa19.02■□□□□ 0.64
CLN3-257ENST00000637110 DMRT2Q9Y5R5 561 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms