RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 CEP170Q5SW79 1584 aa15.71■□□□□ 0.11
PDLIM5-223ENST00000627587 SHROOM2Q13796 1616 aa15.69■□□□□ 0.1
PDLIM5-223ENST00000627587 ERCC6L2Q5T890 1561 aa15.67■□□□□ 0.1
PDLIM5-223ENST00000627587 JPH4Q96JJ6 628 aa15.65■□□□□ 0.1
PDLIM5-223ENST00000627587 RUSC2Q8N2Y8 1516 aa15.64■□□□□ 0.09
PDLIM5-223ENST00000627587 FAM9AQ8IZU1 332 aaPredicted RBP15.63■□□□□ 0.09
PDLIM5-223ENST00000627587 LOC105371045A0A1W2PR82 267 aa15.62■□□□□ 0.09
PDLIM5-223ENST00000627587 PRG4Q92954 1404 aaPredicted RBP15.62■□□□□ 0.09
PDLIM5-223ENST00000627587 NPM1P06748 294 aaKnown RBP eCLIP15.59■□□□□ 0.09
PDLIM5-223ENST00000627587 PLPPR3Q6T4P5 718 aa15.57■□□□□ 0.08
PDLIM5-223ENST00000627587 PIAS4Q8N2W9 510 aaPredicted RBP15.55■□□□□ 0.08
PDLIM5-223ENST00000627587 EEA1Q15075 1411 aa15.55■□□□□ 0.08
PDLIM5-223ENST00000627587 KIF13AQ9H1H9 1805 aa15.51■□□□□ 0.07
PDLIM5-223ENST00000627587 KIF27Q86VH2 1401 aa15.5■□□□□ 0.07
PDLIM5-223ENST00000627587 KIAA0586Q9BVV6 1533 aa15.5■□□□□ 0.07
PDLIM5-223ENST00000627587 IGF1RP08069 1367 aa15.49■□□□□ 0.07
PDLIM5-223ENST00000627587 FAM69CQ0P6D2 419 aa15.49■□□□□ 0.07
PDLIM5-223ENST00000627587 ABCC10Q5T3U5 1492 aa15.48■□□□□ 0.07
PDLIM5-223ENST00000627587 MAPKBP1O60336 1514 aa15.47■□□□□ 0.07
PDLIM5-223ENST00000627587 PPP6R1Q9UPN7 881 aa15.46■□□□□ 0.07
PDLIM5-223ENST00000627587 CUL7Q14999 1698 aa15.46■□□□□ 0.07
PDLIM5-223ENST00000627587 CSRNP3Q8WYN3 585 aa15.46■□□□□ 0.06
PDLIM5-223ENST00000627587 KIF21BO75037 1637 aa15.44■□□□□ 0.06
PDLIM5-223ENST00000627587 EHMT2Q96KQ7 1210 aa15.41■□□□□ 0.06
PDLIM5-223ENST00000627587 ADCY10Q96PN6 1610 aa15.41■□□□□ 0.06
PDLIM5-223ENST00000627587 CARMIL1Q5VZK9 1371 aa15.4■□□□□ 0.06
PDLIM5-223ENST00000627587 PTPRGP23470 1445 aa15.39■□□□□ 0.05
PDLIM5-223ENST00000627587 DIP2BQ9P265 1576 aa15.39■□□□□ 0.05
PDLIM5-223ENST00000627587 CARMIL2Q6F5E8 1435 aa15.39■□□□□ 0.05
PDLIM5-223ENST00000627587 ADRA2BP18089 450 aa15.37■□□□□ 0.05
PDLIM5-223ENST00000627587 PRXQ9BXM0 1461 aa15.36■□□□□ 0.05
PDLIM5-223ENST00000627587 TNIKQ9UKE5 1360 aa15.35■□□□□ 0.05
PDLIM5-223ENST00000627587 GOLGA3Q08378 1498 aa15.35■□□□□ 0.05
PDLIM5-223ENST00000627587 RAPGEF2Q9Y4G8 1499 aa15.35■□□□□ 0.05
PDLIM5-223ENST00000627587 KDM6BO15054 1643 aa15.31■□□□□ 0.04
PDLIM5-223ENST00000627587 ABCC2Q92887 1545 aa15.3■□□□□ 0.04
PDLIM5-223ENST00000627587 PLB1Q6P1J6 1458 aa15.29■□□□□ 0.04
PDLIM5-223ENST00000627587 IQGAP2Q13576 1575 aa15.29■□□□□ 0.04
PDLIM5-223ENST00000627587 UHRF1BP1LA0JNW5 1464 aa15.29■□□□□ 0.04
PDLIM5-223ENST00000627587 TSPOAP1O95153 1857 aa15.27■□□□□ 0.04
PDLIM5-223ENST00000627587 TTBK1Q5TCY1 1321 aaPredicted RBP15.27■□□□□ 0.03
PDLIM5-223ENST00000627587 GLI2P10070 1586 aa15.26■□□□□ 0.03
PDLIM5-223ENST00000627587 UACAQ9BZF9 1416 aa15.26■□□□□ 0.03
PDLIM5-223ENST00000627587 ASXL2Q76L83 1435 aa15.25■□□□□ 0.03
PDLIM5-223ENST00000627587 CEP162Q5TB80 1403 aa15.23■□□□□ 0.03
PDLIM5-223ENST00000627587 KDM4FA0A1W2PPD8 638 aa15.23■□□□□ 0.03
PDLIM5-223ENST00000627587 DISP1Q96F81 1524 aa15.22■□□□□ 0.03
PDLIM5-223ENST00000627587 UBTFP17480 764 aaKnown RBP15.21■□□□□ 0.03
PDLIM5-223ENST00000627587 UGGT2Q9NYU1 1516 aa15.21■□□□□ 0.03
PDLIM5-223ENST00000627587 KDM5BQ9UGL1 1544 aa15.2■□□□□ 0.02
PDLIM5-223ENST00000627587 TEX14Q8IWB6 1497 aa15.16■□□□□ 0.02
PDLIM5-223ENST00000627587 EPRSP07814 1512 aaKnown RBP15.16■□□□□ 0.02
PDLIM5-223ENST00000627587 PPRC1Q5VV67 1664 aaKnown RBP15.15■□□□□ 0.02
PDLIM5-223ENST00000627587 KIAA0556O60303 1618 aa15.14■□□□□ 0.01
PDLIM5-223ENST00000627587 MAP3K4Q9Y6R4 1608 aa15.12■□□□□ 0.01
PDLIM5-223ENST00000627587 ZCCHC11Q5TAX3 1644 aaKnown RBP15.12■□□□□ 0.01
PDLIM5-223ENST00000627587 CLIP1P30622 1438 aa15.1■□□□□ 0.01
PDLIM5-223ENST00000627587 CTTNBP2Q8WZ74 1663 aa15.09■□□□□ 0.01
PDLIM5-223ENST00000627587 WDR7Q9Y4E6 1490 aa15.08■□□□□ 0.01
PDLIM5-223ENST00000627587 COL17A1Q9UMD9 1497 aaPredicted RBP15.07■□□□□ 0
PDLIM5-223ENST00000627587 ADGRL1O94910 1474 aa15.05■□□□□ 0
PDLIM5-223ENST00000627587 CD109Q6YHK3 1445 aa15.03■□□□□ -0
PDLIM5-223ENST00000627587 MAGI3Q5TCQ9 1506 aa15.03■□□□□ -0
PDLIM5-223ENST00000627587 ARHGAP35Q9NRY4 1499 aa15.02■□□□□ -0
PDLIM5-223ENST00000627587 ABCA8O94911 1581 aa15.02■□□□□ -0
PDLIM5-223ENST00000627587 KCNH8Q96L42 1107 aa15.02■□□□□ -0
PDLIM5-223ENST00000627587 CFAP43Q8NDM7 1665 aa15.02■□□□□ -0
PDLIM5-223ENST00000627587 RANGAP1P46060 587 aaPredicted RBP14.99□□□□□ -0.01
PDLIM5-223ENST00000627587 VPS8Q8N3P4 1428 aa14.99□□□□□ -0.01
PDLIM5-223ENST00000627587 PHLDB1Q86UU1 1377 aa14.97□□□□□ -0.01
PDLIM5-223ENST00000627587 SAMD9Q5K651 1589 aa14.93□□□□□ -0.02
PDLIM5-223ENST00000627587 ARAP3Q8WWN8 1544 aa14.92□□□□□ -0.02
PDLIM5-223ENST00000627587 ATP10BO94823 1461 aa14.92□□□□□ -0.02
PDLIM5-223ENST00000627587 EFCAB5A4FU69 1503 aa14.92□□□□□ -0.02
PDLIM5-223ENST00000627587 ILDR1Q86SU0 546 aaPredicted RBP14.91□□□□□ -0.02
PDLIM5-223ENST00000627587 P3H3Q8IVL6 736 aa14.9□□□□□ -0.02
PDLIM5-223ENST00000627587 HECW2Q9P2P5 1572 aa14.87□□□□□ -0.03
PDLIM5-223ENST00000627587 PPARGC1BQ86YN6 1023 aaKnown RBP14.87□□□□□ -0.03
PDLIM5-223ENST00000627587 ABCA9Q8IUA7 1624 aa14.86□□□□□ -0.03
PDLIM5-223ENST00000627587 FHOD3Q2V2M9 1422 aa14.86□□□□□ -0.03
PDLIM5-223ENST00000627587 NEO1Q92859 1461 aa14.85□□□□□ -0.03
PDLIM5-223ENST00000627587 ARID3CA6NKF2 412 aa14.84□□□□□ -0.03
PDLIM5-223ENST00000627587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.84□□□□□ -0.03
PDLIM5-223ENST00000627587 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
PDLIM5-223ENST00000627587 RAPGEF6Q8TEU7 1601 aa14.83□□□□□ -0.04
PDLIM5-223ENST00000627587 PCF11O94913 1555 aaKnown RBP14.83□□□□□ -0.04
PDLIM5-223ENST00000627587 PLEKHD1A6NEE1 506 aa14.81□□□□□ -0.04
PDLIM5-223ENST00000627587 PCGF6Q9BYE7 350 aa14.81□□□□□ -0.04
PDLIM5-223ENST00000627587 TRIM26Q12899 539 aaPredicted RBP14.8□□□□□ -0.04
PDLIM5-223ENST00000627587 LRRIQ1Q96JM4 1722 aa14.79□□□□□ -0.04
PDLIM5-223ENST00000627587 RAPGEF3O95398 923 aa14.78□□□□□ -0.04
PDLIM5-223ENST00000627587 NUP153P49790 1475 aaKnown RBP14.77□□□□□ -0.05
PDLIM5-223ENST00000627587 ADAMTSL3P82987 1691 aa14.76□□□□□ -0.05
PDLIM5-223ENST00000627587 PTPRMP28827 1452 aa14.75□□□□□ -0.05
PDLIM5-223ENST00000627587 FYCO1Q9BQS8 1478 aa14.75□□□□□ -0.05
PDLIM5-223ENST00000627587 TIAM1Q13009 1591 aa14.75□□□□□ -0.05
PDLIM5-223ENST00000627587 ARID4BQ4LE39 1312 aaPredicted RBP14.74□□□□□ -0.05
PDLIM5-223ENST00000627587 CASKIN1Q8WXD9 1431 aa14.74□□□□□ -0.05
PDLIM5-223ENST00000627587 MAP3K1Q13233 1512 aa14.74□□□□□ -0.05
PDLIM5-223ENST00000627587 FMN1Q68DA7 1419 aa14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms