RNA–Protein interactions for RNA: ENST00000627000.1

CHRNA4-209, Transcript of cholinergic receptor nicotinic alpha 4 subunit, humanhuman

TSL 1 (best)

Gene CHRNA4, Length 2,192 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4-209ENST00000627000 P3H3Q8IVL6 736 aa29.97■■■□□ 2.39
CHRNA4-209ENST00000627000 ERCC6Q03468 1493 aa29.97■■■□□ 2.39
CHRNA4-209ENST00000627000 IFT140Q96RY7 1462 aa29.91■■■□□ 2.38
CHRNA4-209ENST00000627000 FHOD3Q2V2M9 1422 aa29.9■■■□□ 2.38
CHRNA4-209ENST00000627000 ZNF608Q9ULD9 1512 aaPredicted RBP29.9■■■□□ 2.38
CHRNA4-209ENST00000627000 CCER1Q8TC90 406 aaPredicted RBP29.89■■■□□ 2.38
CHRNA4-209ENST00000627000 EFCAB5A4FU69 1503 aa29.89■■■□□ 2.37
CHRNA4-209ENST00000627000 THOC2Q8NI27 1593 aaKnown RBP29.87■■■□□ 2.37
CHRNA4-209ENST00000627000 HNRNPUL2Q1KMD3 747 aaKnown RBP29.87■■■□□ 2.37
CHRNA4-209ENST00000627000 FHAD1B1AJZ9 1412 aa29.84■■■□□ 2.37
CHRNA4-209ENST00000627000 GRIN2BQ13224 1484 aa29.83■■■□□ 2.37
CHRNA4-209ENST00000627000 PCF11O94913 1555 aaKnown RBP29.83■■■□□ 2.37
CHRNA4-209ENST00000627000 ADAMTS12P58397 1594 aa29.83■■■□□ 2.37
CHRNA4-209ENST00000627000 TIAM1Q13009 1591 aa29.82■■■□□ 2.36
CHRNA4-209ENST00000627000 MAP3K1Q13233 1512 aa29.78■■■□□ 2.36
CHRNA4-209ENST00000627000 SAMD9Q5K651 1589 aa29.75■■■□□ 2.35
CHRNA4-209ENST00000627000 EIF4G3O43432 1585 aaKnown RBP29.73■■■□□ 2.35
CHRNA4-209ENST00000627000 ATP1B4Q9UN42 357 aaPredicted RBP29.71■■■□□ 2.35
CHRNA4-209ENST00000627000 CFAP43Q8NDM7 1665 aa29.7■■■□□ 2.35
CHRNA4-209ENST00000627000 LRRC9Q6ZRR7 1453 aa29.68■■■□□ 2.34
CHRNA4-209ENST00000627000 FYCO1Q9BQS8 1478 aa29.68■■■□□ 2.34
CHRNA4-209ENST00000627000 CASKIN1Q8WXD9 1431 aa29.68■■■□□ 2.34
CHRNA4-209ENST00000627000 RRBP1Q9P2E9 1410 aaKnown RBP29.68■■■□□ 2.34
CHRNA4-209ENST00000627000 SNAPC4Q5SXM2 1469 aa29.65■■■□□ 2.34
CHRNA4-209ENST00000627000 FMN1Q68DA7 1419 aa29.65■■■□□ 2.34
CHRNA4-209ENST00000627000 IQGAP2Q13576 1575 aa29.62■■■□□ 2.33
CHRNA4-209ENST00000627000 CCNB3Q8WWL7 1395 aa29.58■■■□□ 2.33
CHRNA4-209ENST00000627000 LRRIQ1Q96JM4 1722 aa29.52■■■□□ 2.32
CHRNA4-209ENST00000627000 PHLDB1Q86UU1 1377 aa29.52■■■□□ 2.32
CHRNA4-209ENST00000627000 GRIN2AQ12879 1464 aa29.51■■■□□ 2.31
CHRNA4-209ENST00000627000 MAGI1Q96QZ7 1491 aaPredicted RBP29.48■■■□□ 2.31
CHRNA4-209ENST00000627000 UGGT2Q9NYU1 1516 aa29.45■■■□□ 2.3
CHRNA4-209ENST00000627000 KIAA0586Q9BVV6 1533 aa29.44■■■□□ 2.3
CHRNA4-209ENST00000627000 ITGAEP38570 1179 aa29.42■■■□□ 2.3
CHRNA4-209ENST00000627000 SYNJ2O15056 1496 aa29.41■■■□□ 2.3
CHRNA4-209ENST00000627000 CHMP7Q8WUX9 453 aaPredicted RBP29.39■■■□□ 2.3
CHRNA4-209ENST00000627000 FBLN2P98095 1184 aa29.36■■■□□ 2.29
CHRNA4-209ENST00000627000 CEP170Q5SW79 1584 aa29.36■■■□□ 2.29
CHRNA4-209ENST00000627000 MTUS2Q5JR59 1369 aa29.35■■■□□ 2.29
CHRNA4-209ENST00000627000 DISP1Q96F81 1524 aa29.34■■■□□ 2.29
CHRNA4-209ENST00000627000 KIAA0556O60303 1618 aa29.33■■■□□ 2.29
CHRNA4-209ENST00000627000 FAM50AQ14320 339 aaKnown RBP29.3■■■□□ 2.28
CHRNA4-209ENST00000627000 HECW1Q76N89 1606 aa29.3■■■□□ 2.28
CHRNA4-209ENST00000627000 MAGI3Q5TCQ9 1506 aa29.26■■■□□ 2.27
CHRNA4-209ENST00000627000 CCDC18Q5T9S5 1454 aa29.26■■■□□ 2.27
CHRNA4-209ENST00000627000 DHX57Q6P158 1386 aaKnown RBP29.26■■■□□ 2.27
CHRNA4-209ENST00000627000 EHBP1L1Q8N3D4 1523 aa29.23■■■□□ 2.27
CHRNA4-209ENST00000627000 NUP160Q12769 1436 aa29.23■■■□□ 2.27
CHRNA4-209ENST00000627000 EPRSP07814 1512 aaKnown RBP29.23■■■□□ 2.27
CHRNA4-209ENST00000627000 NCOA2Q15596 1464 aa29.22■■■□□ 2.27
CHRNA4-209ENST00000627000 SUPT6HQ7KZ85 1726 aaKnown RBP29.21■■■□□ 2.27
CHRNA4-209ENST00000627000 CDK13Q14004 1512 aaKnown RBP29.21■■■□□ 2.27
CHRNA4-209ENST00000627000 FGD6Q6ZV73 1430 aa29.2■■■□□ 2.27
CHRNA4-209ENST00000627000 ARID3CA6NKF2 412 aa29.19■■■□□ 2.26
CHRNA4-209ENST00000627000 RAB3GAP2Q9H2M9 1393 aa29.15■■■□□ 2.26
CHRNA4-209ENST00000627000 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.15■■■□□ 2.26
CHRNA4-209ENST00000627000 MYOM3Q5VTT5 1437 aa29.12■■■□□ 2.25
CHRNA4-209ENST00000627000 ARHGEF11O15085 1522 aa29.12■■■□□ 2.25
CHRNA4-209ENST00000627000 JPH4Q96JJ6 628 aa29.12■■■□□ 2.25
CHRNA4-209ENST00000627000 RAPGEF6Q8TEU7 1601 aa29.11■■■□□ 2.25
CHRNA4-209ENST00000627000 SETD5Q9C0A6 1442 aa29.1■■■□□ 2.25
CHRNA4-209ENST00000627000 NUP153P49790 1475 aaKnown RBP29.09■■■□□ 2.25
CHRNA4-209ENST00000627000 CLSPNQ9HAW4 1339 aa29.08■■■□□ 2.25
CHRNA4-209ENST00000627000 CARMIL2Q6F5E8 1435 aa29.04■■■□□ 2.24
CHRNA4-209ENST00000627000 CHD1O14646 1710 aa29.02■■■□□ 2.24
CHRNA4-209ENST00000627000 PLB1Q6P1J6 1458 aa29.01■■■□□ 2.24
CHRNA4-209ENST00000627000 PTPN23Q9H3S7 1636 aa29■■■□□ 2.23
CHRNA4-209ENST00000627000 PTPRKQ15262 1439 aa28.99■■■□□ 2.23
CHRNA4-209ENST00000627000 MAPKBP1O60336 1514 aa28.91■■■□□ 2.22
CHRNA4-209ENST00000627000 TCOF1Q13428 1488 aaKnown RBP28.9■■■□□ 2.22
CHRNA4-209ENST00000627000 PRG4Q92954 1404 aaPredicted RBP28.87■■■□□ 2.21
CHRNA4-209ENST00000627000 ZNF316A6NFI3 1004 aaPredicted RBP28.86■■■□□ 2.21
CHRNA4-209ENST00000627000 ABCA8O94911 1581 aa28.85■■■□□ 2.21
CHRNA4-209ENST00000627000 MIA2Q96PC5 1412 aa28.85■■■□□ 2.21
CHRNA4-209ENST00000627000 CDK11AQ9UQ88 783 aaPredicted RBP28.85■■■□□ 2.21
CHRNA4-209ENST00000627000 HFM1A2PYH4 1435 aa28.83■■■□□ 2.21
CHRNA4-209ENST00000627000 TROQ12816 1431 aaPredicted RBP28.81■■■□□ 2.2
CHRNA4-209ENST00000627000 NAIPQ13075 1403 aa28.78■■■□□ 2.2
CHRNA4-209ENST00000627000 DIEXFQ68CQ4 756 aaKnown RBP28.78■■■□□ 2.2
CHRNA4-209ENST00000627000 CHIC2Q9UKJ5 165 aa28.75■■■□□ 2.19
CHRNA4-209ENST00000627000 SHROOM2Q13796 1616 aa28.75■■■□□ 2.19
CHRNA4-209ENST00000627000 KIF14Q15058 1648 aa28.75■■■□□ 2.19
CHRNA4-209ENST00000627000 PTPRGP23470 1445 aa28.74■■■□□ 2.19
CHRNA4-209ENST00000627000 ATP10BO94823 1461 aa28.73■■■□□ 2.19
CHRNA4-209ENST00000627000 ADCY10Q96PN6 1610 aa28.72■■■□□ 2.19
CHRNA4-209ENST00000627000 RRP7BPQ9NSQ0 103 aa28.71■■■□□ 2.19
CHRNA4-209ENST00000627000 ZNF644Q9H582 1327 aaPredicted RBP28.7■■■□□ 2.19
CHRNA4-209ENST00000627000 SIN3AQ96ST3 1273 aa28.68■■■□□ 2.18
CHRNA4-209ENST00000627000 ERCC6L2Q5T890 1561 aa28.68■■■□□ 2.18
CHRNA4-209ENST00000627000 GCC2Q8IWJ2 1684 aa28.66■■■□□ 2.18
CHRNA4-209ENST00000627000 UACAQ9BZF9 1416 aa28.65■■■□□ 2.18
CHRNA4-209ENST00000627000 GPATCH8Q9UKJ3 1502 aaKnown RBP28.64■■■□□ 2.18
CHRNA4-209ENST00000627000 ITSN2Q9NZM3 1697 aa28.64■■■□□ 2.18
CHRNA4-209ENST00000627000 PLEKHD1A6NEE1 506 aa28.64■■■□□ 2.17
CHRNA4-209ENST00000627000 DAPK1P53355 1430 aa28.63■■■□□ 2.17
CHRNA4-209ENST00000627000 DNMT1P26358 1616 aaKnown RBP28.63■■■□□ 2.17
CHRNA4-209ENST00000627000 NEUROD1Q13562 356 aa28.61■■■□□ 2.17
CHRNA4-209ENST00000627000 AKNAQ7Z591 1439 aa28.61■■■□□ 2.17
CHRNA4-209ENST00000627000 KDM6BO15054 1643 aa28.61■■■□□ 2.17
CHRNA4-209ENST00000627000 ABCC5O15440 1437 aa28.61■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms