RNA–Protein interactions for RNA: ENST00000617310.4

SMARCA1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1, humanhuman

TSL 2

Gene SMARCA1, Length 4,291 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1-205ENST00000617310 GOLGA3Q08378 1498 aa14□□□□□ -0.17
SMARCA1-205ENST00000617310 NEFMP07197 916 aa14□□□□□ -0.17
SMARCA1-205ENST00000617310 CARMIL1Q5VZK9 1371 aa13.97□□□□□ -0.17
SMARCA1-205ENST00000617310 MLECQ14165 292 aa13.96□□□□□ -0.17
SMARCA1-205ENST00000617310 PPP1R15AO75807 674 aaPredicted RBP13.96□□□□□ -0.17
SMARCA1-205ENST00000617310 CCDC88BA6NC98 1476 aa13.96□□□□□ -0.18
SMARCA1-205ENST00000617310 CANXP27824 592 aaKnown RBP13.95□□□□□ -0.18
SMARCA1-205ENST00000617310 EEA1Q15075 1411 aa13.94□□□□□ -0.18
SMARCA1-205ENST00000617310 FAM9BQ8IZU0 186 aa13.93□□□□□ -0.18
SMARCA1-205ENST00000617310 EIF4G1Q04637 1599 aaKnown RBP13.93□□□□□ -0.18
SMARCA1-205ENST00000617310 SENP3-EIF4A1A0A087X0R7 540 aa13.93□□□□□ -0.18
SMARCA1-205ENST00000617310 C14orf37Q86TY3 774 aa13.92□□□□□ -0.18
SMARCA1-205ENST00000617310 A0A0G2JS52 829 aa13.91□□□□□ -0.18
SMARCA1-205ENST00000617310 ABCC8Q09428 1581 aa13.91□□□□□ -0.18
SMARCA1-205ENST00000617310 ZBTB7CA1YPR0 619 aa13.9□□□□□ -0.18
SMARCA1-205ENST00000617310 CEP164Q9UPV0 1460 aa13.89□□□□□ -0.19
SMARCA1-205ENST00000617310 PDS5BQ9NTI5 1447 aa13.89□□□□□ -0.19
SMARCA1-205ENST00000617310 GTF3C3Q9Y5Q9 886 aa13.89□□□□□ -0.19
SMARCA1-205ENST00000617310 TNIKQ9UKE5 1360 aa13.88□□□□□ -0.19
SMARCA1-205ENST00000617310 ZBTB47Q9UFB7 747 aaPredicted RBP13.86□□□□□ -0.19
SMARCA1-205ENST00000617310 HNRNPUQ00839 825 aaKnown RBP eCLIP13.86□□□□□ -0.19
SMARCA1-205ENST00000617310 TMC1Q8TDI8 760 aa13.85□□□□□ -0.19
SMARCA1-205ENST00000617310 PEG3Q9GZU2 1588 aa13.84□□□□□ -0.19
SMARCA1-205ENST00000617310 SIN3AQ96ST3 1273 aa13.84□□□□□ -0.19
SMARCA1-205ENST00000617310 CADPSQ9ULU8 1353 aa13.83□□□□□ -0.19
SMARCA1-205ENST00000617310 GGT6Q6P531 493 aa13.81□□□□□ -0.2
SMARCA1-205ENST00000617310 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
SMARCA1-205ENST00000617310 CCNB3Q8WWL7 1395 aa13.79□□□□□ -0.2
SMARCA1-205ENST00000617310 KANK4Q5T7N3 995 aaPredicted RBP13.79□□□□□ -0.2
SMARCA1-205ENST00000617310 WIZO95785 1651 aa13.79□□□□□ -0.2
SMARCA1-205ENST00000617310 ATAD2BQ9ULI0 1458 aa13.78□□□□□ -0.2
SMARCA1-205ENST00000617310 MRS2Q9HD23 443 aa13.77□□□□□ -0.2
SMARCA1-205ENST00000617310 EIF4G2P78344 907 aaKnown RBP eCLIP13.77□□□□□ -0.21
SMARCA1-205ENST00000617310 LMOD2Q6P5Q4 547 aa13.77□□□□□ -0.21
SMARCA1-205ENST00000617310 PPM1GO15355 546 aaPredicted RBP13.75□□□□□ -0.21
SMARCA1-205ENST00000617310 CYB5RLQ6IPT4 315 aa13.75□□□□□ -0.21
SMARCA1-205ENST00000617310 FOXD1Q16676 465 aa13.74□□□□□ -0.21
SMARCA1-205ENST00000617310 JPH4Q96JJ6 628 aa13.72□□□□□ -0.21
SMARCA1-205ENST00000617310 SMARCA4P51532 1647 aa13.72□□□□□ -0.21
SMARCA1-205ENST00000617310 SAFB2Q14151 953 aaKnown RBP eCLIP13.72□□□□□ -0.21
SMARCA1-205ENST00000617310 CARD11Q9BXL7 1154 aa13.72□□□□□ -0.21
SMARCA1-205ENST00000617310 HAP1P54257 671 aaPredicted RBP13.71□□□□□ -0.22
SMARCA1-205ENST00000617310 WDR43Q15061 677 aaKnown RBP eCLIP13.71□□□□□ -0.222e-6■■■■■ 28
SMARCA1-205ENST00000617310 FHAD1B1AJZ9 1412 aa13.69□□□□□ -0.22
SMARCA1-205ENST00000617310 MIER1Q8N108 512 aa13.69□□□□□ -0.22
SMARCA1-205ENST00000617310 TNNT2P45379 298 aaPredicted RBP13.68□□□□□ -0.22
SMARCA1-205ENST00000617310 POGKQ9P215 609 aa13.68□□□□□ -0.22
SMARCA1-205ENST00000617310 CARMIL2Q6F5E8 1435 aa13.67□□□□□ -0.22
SMARCA1-205ENST00000617310 DCAF11Q8TEB1 546 aa13.67□□□□□ -0.22
SMARCA1-205ENST00000617310 FKBP8Q14318 412 aa13.67□□□□□ -0.22
SMARCA1-205ENST00000617310 SOX12O15370 315 aa13.66□□□□□ -0.22
SMARCA1-205ENST00000617310 IRX6P78412 446 aaPredicted RBP13.65□□□□□ -0.22
SMARCA1-205ENST00000617310 FHOD3Q2V2M9 1422 aa13.65□□□□□ -0.22
SMARCA1-205ENST00000617310 HNRNPMP52272 730 aaKnown RBP eCLIP13.64□□□□□ -0.232e-6■■■■□ 21.2
SMARCA1-205ENST00000617310 TOP2AP11388 1531 aaKnown RBP13.63□□□□□ -0.23
SMARCA1-205ENST00000617310 FANCD2Q9BXW9 1451 aa13.63□□□□□ -0.23
SMARCA1-205ENST00000617310 EFCAB2Q5VUJ9 269 aa13.63□□□□□ -0.23
SMARCA1-205ENST00000617310 ACIN1Q9UKV3 1341 aaKnown RBP13.63□□□□□ -0.23
SMARCA1-205ENST00000617310 NPM2Q86SE8 214 aaKnown RBP13.62□□□□□ -0.23
SMARCA1-205ENST00000617310 NEUROD2Q15784 382 aa13.62□□□□□ -0.23
SMARCA1-205ENST00000617310 STK26Q9P289 416 aa13.62□□□□□ -0.23
SMARCA1-205ENST00000617310 RUSC2Q8N2Y8 1516 aa13.62□□□□□ -0.23
SMARCA1-205ENST00000617310 MYT1Q01538 1121 aa13.61□□□□□ -0.23
SMARCA1-205ENST00000617310 PKD2Q13563 968 aa13.61□□□□□ -0.23
SMARCA1-205ENST00000617310 KIF3BO15066 747 aa13.6□□□□□ -0.23
SMARCA1-205ENST00000617310 DNAJC5BQ9UF47 199 aa13.59□□□□□ -0.23
SMARCA1-205ENST00000617310 NUTM2DQ5VT03 806 aaPredicted RBP13.59□□□□□ -0.23
SMARCA1-205ENST00000617310 VPS8Q8N3P4 1428 aa13.59□□□□□ -0.23
SMARCA1-205ENST00000617310 RTL5Q5HYW3 569 aaPredicted RBP13.59□□□□□ -0.23
SMARCA1-205ENST00000617310 KNSTRNQ9Y448 316 aa13.59□□□□□ -0.23
SMARCA1-205ENST00000617310 ARXQ96QS3 562 aa13.58□□□□□ -0.24
SMARCA1-205ENST00000617310 RAPGEF2Q9Y4G8 1499 aa13.57□□□□□ -0.24
SMARCA1-205ENST00000617310 OSCARQ8IYS5 282 aa13.57□□□□□ -0.24
SMARCA1-205ENST00000617310 CC2D1BQ5T0F9 858 aaKnown RBP13.55□□□□□ -0.24
SMARCA1-205ENST00000617310 RAD54L2Q9Y4B4 1467 aa13.54□□□□□ -0.24
SMARCA1-205ENST00000617310 SRPK2P78362 688 aaKnown RBP13.53□□□□□ -0.24
SMARCA1-205ENST00000617310 NUP155O75694 1391 aa13.53□□□□□ -0.24
SMARCA1-205ENST00000617310 KANK1Q14678 1352 aa13.52□□□□□ -0.24
SMARCA1-205ENST00000617310 FMN1Q68DA7 1419 aa13.52□□□□□ -0.25
SMARCA1-205ENST00000617310 ARHGAP35Q9NRY4 1499 aa13.51□□□□□ -0.25
SMARCA1-205ENST00000617310 LAS1LQ9Y4W2 734 aaKnown RBP13.5□□□□□ -0.25
SMARCA1-205ENST00000617310 SPAG9O60271 1321 aaKnown RBP13.5□□□□□ -0.25
SMARCA1-205ENST00000617310 CDCA8Q53HL2 280 aa13.5□□□□□ -0.25
SMARCA1-205ENST00000617310 CCDC136Q96JN2 1154 aa13.5□□□□□ -0.25
SMARCA1-205ENST00000617310 AQRO60306 1485 aaKnown RBP eCLIP13.49□□□□□ -0.253e-12■□□□□ 9.6
SMARCA1-205ENST00000617310 NUTM2FA1L443 756 aa13.49□□□□□ -0.25
SMARCA1-205ENST00000617310 U2SURPO15042 1029 aaKnown RBP13.49□□□□□ -0.25
SMARCA1-205ENST00000617310 PTPRGP23470 1445 aa13.49□□□□□ -0.25
SMARCA1-205ENST00000617310 CFAP53Q96M91 514 aa13.47□□□□□ -0.25
SMARCA1-205ENST00000617310 MPHOSPH9Q99550 1183 aa13.47□□□□□ -0.25
SMARCA1-205ENST00000617310 NESP48681 1621 aa13.47□□□□□ -0.25
SMARCA1-205ENST00000617310 WASHC2CQ9Y4E1 1318 aa13.47□□□□□ -0.25
SMARCA1-205ENST00000617310 FGD5Q6ZNL6 1462 aa13.45□□□□□ -0.26
SMARCA1-205ENST00000617310 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.44□□□□□ -0.26
SMARCA1-205ENST00000617310 SETD5Q9C0A6 1442 aa13.44□□□□□ -0.26
SMARCA1-205ENST00000617310 IGF1RP08069 1367 aa13.43□□□□□ -0.26
SMARCA1-205ENST00000617310 RAB3GAP2Q9H2M9 1393 aa13.43□□□□□ -0.26
SMARCA1-205ENST00000617310 PAK3O75914 559 aaPredicted RBP13.43□□□□□ -0.26
SMARCA1-205ENST00000617310 FAM69CQ0P6D2 419 aa13.42□□□□□ -0.26
SMARCA1-205ENST00000617310 HDGFP51858 240 aaKnown RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms