RNA–Protein interactions for RNA: ENST00000615136.4

MMP28-204, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MMP28, Length 2,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-204ENST00000615136 P3H3Q8IVL6 736 aa29.22■■■□□ 2.27
MMP28-204ENST00000615136 ZNF608Q9ULD9 1512 aaPredicted RBP29.22■■■□□ 2.27
MMP28-204ENST00000615136 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.2■■■□□ 2.26
MMP28-204ENST00000615136 THOC2Q8NI27 1593 aaKnown RBP29.2■■■□□ 2.26
MMP28-204ENST00000615136 IFT140Q96RY7 1462 aa29.18■■■□□ 2.26
MMP28-204ENST00000615136 FHOD3Q2V2M9 1422 aa29.15■■■□□ 2.26
MMP28-204ENST00000615136 ADAMTS12P58397 1594 aa29.11■■■□□ 2.25
MMP28-204ENST00000615136 EFCAB5A4FU69 1503 aa29.11■■■□□ 2.25
MMP28-204ENST00000615136 GRIN2BQ13224 1484 aa29.1■■■□□ 2.25
MMP28-204ENST00000615136 FHAD1B1AJZ9 1412 aa29.09■■■□□ 2.25
MMP28-204ENST00000615136 PCF11O94913 1555 aaKnown RBP29.07■■■□□ 2.24
MMP28-204ENST00000615136 HNRNPUL2Q1KMD3 747 aaKnown RBP29.04■■■□□ 2.24
MMP28-204ENST00000615136 TIAM1Q13009 1591 aa29.04■■■□□ 2.24
MMP28-204ENST00000615136 EIF4G3O43432 1585 aaKnown RBP29.03■■■□□ 2.24
MMP28-204ENST00000615136 CCER1Q8TC90 406 aaPredicted RBP29.01■■■□□ 2.24
MMP28-204ENST00000615136 SAMD9Q5K651 1589 aa29.01■■■□□ 2.23
MMP28-204ENST00000615136 MAP3K1Q13233 1512 aa28.98■■■□□ 2.23
MMP28-204ENST00000615136 SNAPC4Q5SXM2 1469 aa28.95■■■□□ 2.22
MMP28-204ENST00000615136 ATP1B4Q9UN42 357 aaPredicted RBP28.93■■■□□ 2.22
MMP28-204ENST00000615136 CFAP43Q8NDM7 1665 aa28.92■■■□□ 2.22
MMP28-204ENST00000615136 CASKIN1Q8WXD9 1431 aa28.91■■■□□ 2.22
MMP28-204ENST00000615136 LRRC9Q6ZRR7 1453 aa28.91■■■□□ 2.22
MMP28-204ENST00000615136 FYCO1Q9BQS8 1478 aa28.91■■■□□ 2.22
MMP28-204ENST00000615136 RRBP1Q9P2E9 1410 aaKnown RBP28.89■■■□□ 2.22
MMP28-204ENST00000615136 IQGAP2Q13576 1575 aa28.87■■■□□ 2.21
MMP28-204ENST00000615136 FMN1Q68DA7 1419 aa28.87■■■□□ 2.21
MMP28-204ENST00000615136 GRIN2AQ12879 1464 aa28.8■■■□□ 2.2
MMP28-204ENST00000615136 LRRIQ1Q96JM4 1722 aa28.8■■■□□ 2.2
MMP28-204ENST00000615136 CCNB3Q8WWL7 1395 aa28.78■■■□□ 2.2
MMP28-204ENST00000615136 PHLDB1Q86UU1 1377 aa28.77■■■□□ 2.2
MMP28-204ENST00000615136 MAGI1Q96QZ7 1491 aaPredicted RBP28.76■■■□□ 2.19
MMP28-204ENST00000615136 KIAA0586Q9BVV6 1533 aa28.72■■■□□ 2.19
MMP28-204ENST00000615136 UGGT2Q9NYU1 1516 aa28.72■■■□□ 2.19
MMP28-204ENST00000615136 SYNJ2O15056 1496 aa28.7■■■□□ 2.18
MMP28-204ENST00000615136 CHMP7Q8WUX9 453 aaPredicted RBP28.67■■■□□ 2.18
MMP28-204ENST00000615136 CEP170Q5SW79 1584 aa28.67■■■□□ 2.18
MMP28-204ENST00000615136 FBLN2P98095 1184 aa28.65■■■□□ 2.18
MMP28-204ENST00000615136 DISP1Q96F81 1524 aa28.64■■■□□ 2.17
MMP28-204ENST00000615136 ITGAEP38570 1179 aa28.63■■■□□ 2.17
MMP28-204ENST00000615136 KIAA0556O60303 1618 aa28.6■■■□□ 2.17
MMP28-204ENST00000615136 MTUS2Q5JR59 1369 aa28.57■■■□□ 2.16
MMP28-204ENST00000615136 MAGI3Q5TCQ9 1506 aa28.55■■■□□ 2.16
MMP28-204ENST00000615136 HECW1Q76N89 1606 aa28.54■■■□□ 2.16
MMP28-204ENST00000615136 NUP160Q12769 1436 aa28.53■■■□□ 2.16
MMP28-204ENST00000615136 FAM50AQ14320 339 aaKnown RBP28.52■■■□□ 2.16
MMP28-204ENST00000615136 EPRSP07814 1512 aaKnown RBP28.49■■■□□ 2.15
MMP28-204ENST00000615136 CDK13Q14004 1512 aaKnown RBP28.49■■■□□ 2.15
MMP28-204ENST00000615136 CCDC18Q5T9S5 1454 aa28.49■■■□□ 2.15
MMP28-204ENST00000615136 ARID3CA6NKF2 412 aa28.48■■■□□ 2.15
MMP28-204ENST00000615136 NCOA2Q15596 1464 aa28.47■■■□□ 2.15
MMP28-204ENST00000615136 EHBP1L1Q8N3D4 1523 aa28.46■■■□□ 2.15
MMP28-204ENST00000615136 DHX57Q6P158 1386 aaKnown RBP28.46■■■□□ 2.15
MMP28-204ENST00000615136 FGD6Q6ZV73 1430 aa28.44■■■□□ 2.14
MMP28-204ENST00000615136 SUPT6HQ7KZ85 1726 aaKnown RBP28.43■■■□□ 2.14
MMP28-204ENST00000615136 JPH4Q96JJ6 628 aa28.4■■■□□ 2.14
MMP28-204ENST00000615136 ARHGEF11O15085 1522 aa28.38■■■□□ 2.13
MMP28-204ENST00000615136 NUP153P49790 1475 aaKnown RBP28.38■■■□□ 2.13
MMP28-204ENST00000615136 RAPGEF6Q8TEU7 1601 aa28.37■■■□□ 2.13
MMP28-204ENST00000615136 RAB3GAP2Q9H2M9 1393 aa28.37■■■□□ 2.13
MMP28-204ENST00000615136 MYOM3Q5VTT5 1437 aa28.36■■■□□ 2.13
MMP28-204ENST00000615136 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.35■■■□□ 2.13
MMP28-204ENST00000615136 CHD1O14646 1710 aa28.33■■■□□ 2.13
MMP28-204ENST00000615136 PLB1Q6P1J6 1458 aa28.32■■■□□ 2.12
MMP28-204ENST00000615136 SETD5Q9C0A6 1442 aa28.31■■■□□ 2.12
MMP28-204ENST00000615136 CARMIL2Q6F5E8 1435 aa28.29■■■□□ 2.12
MMP28-204ENST00000615136 PTPRKQ15262 1439 aa28.27■■■□□ 2.12
MMP28-204ENST00000615136 PTPN23Q9H3S7 1636 aa28.24■■■□□ 2.11
MMP28-204ENST00000615136 CLSPNQ9HAW4 1339 aa28.23■■■□□ 2.11
MMP28-204ENST00000615136 DIEXFQ68CQ4 756 aaKnown RBP28.19■■■□□ 2.1
MMP28-204ENST00000615136 PRG4Q92954 1404 aaPredicted RBP28.18■■■□□ 2.1
MMP28-204ENST00000615136 TCOF1Q13428 1488 aaKnown RBP28.15■■■□□ 2.1
MMP28-204ENST00000615136 MAPKBP1O60336 1514 aa28.15■■■□□ 2.1
MMP28-204ENST00000615136 ZNF316A6NFI3 1004 aaPredicted RBP28.14■■■□□ 2.1
MMP28-204ENST00000615136 ABCA8O94911 1581 aa28.14■■■□□ 2.1
MMP28-204ENST00000615136 MIA2Q96PC5 1412 aa28.08■■■□□ 2.09
MMP28-204ENST00000615136 CDK11AQ9UQ88 783 aaPredicted RBP28.08■■■□□ 2.08
MMP28-204ENST00000615136 TROQ12816 1431 aaPredicted RBP28.07■■■□□ 2.08
MMP28-204ENST00000615136 SHROOM2Q13796 1616 aa28.07■■■□□ 2.08
MMP28-204ENST00000615136 HFM1A2PYH4 1435 aa28.07■■■□□ 2.08
MMP28-204ENST00000615136 KIF14Q15058 1648 aa28.05■■■□□ 2.08
MMP28-204ENST00000615136 ERCC6L2Q5T890 1561 aa28.03■■■□□ 2.08
MMP28-204ENST00000615136 PTPRGP23470 1445 aa28.03■■■□□ 2.08
MMP28-204ENST00000615136 NAIPQ13075 1403 aa28.03■■■□□ 2.08
MMP28-204ENST00000615136 ATP10BO94823 1461 aa28.02■■■□□ 2.08
MMP28-204ENST00000615136 CHIC2Q9UKJ5 165 aa28.01■■■□□ 2.07
MMP28-204ENST00000615136 ZNF644Q9H582 1327 aaPredicted RBP28■■■□□ 2.07
MMP28-204ENST00000615136 ADCY10Q96PN6 1610 aa27.98■■■□□ 2.07
MMP28-204ENST00000615136 RRP7BPQ9NSQ0 103 aa27.96■■■□□ 2.07
MMP28-204ENST00000615136 CLASP1Q7Z460 1538 aa27.93■■■□□ 2.06
MMP28-204ENST00000615136 GPATCH8Q9UKJ3 1502 aaKnown RBP27.92■■■□□ 2.06
MMP28-204ENST00000615136 SIN3AQ96ST3 1273 aa27.92■■■□□ 2.06
MMP28-204ENST00000615136 KDM6BO15054 1643 aa27.9■■■□□ 2.06
MMP28-204ENST00000615136 GCC2Q8IWJ2 1684 aa27.89■■■□□ 2.06
MMP28-204ENST00000615136 PLEKHD1A6NEE1 506 aa27.89■■■□□ 2.06
MMP28-204ENST00000615136 DAPK1P53355 1430 aa27.89■■■□□ 2.06
MMP28-204ENST00000615136 DNMT1P26358 1616 aaKnown RBP27.88■■■□□ 2.05
MMP28-204ENST00000615136 ABCC5O15440 1437 aa27.88■■■□□ 2.05
MMP28-204ENST00000615136 ITSN2Q9NZM3 1697 aa27.87■■■□□ 2.05
MMP28-204ENST00000615136 UACAQ9BZF9 1416 aa27.87■■■□□ 2.05
MMP28-204ENST00000615136 CFDP1Q9UEE9 299 aaPredicted RBP27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 8 ms