RNA–Protein interactions for RNA: ENST00000614931.1

PCDH9-205, Transcript of protocadherin 9, humanhuman

TSL 1 (best)

Gene PCDH9, Length 461 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-205ENST00000614931 ERCC6L2Q5T890 1561 aa13.34□□□□□ -0.27
PCDH9-205ENST00000614931 CUL7Q14999 1698 aa13.31□□□□□ -0.28
PCDH9-205ENST00000614931 KIF21BO75037 1637 aa13.3□□□□□ -0.28
PCDH9-205ENST00000614931 CSRNP3Q8WYN3 585 aa13.28□□□□□ -0.28
PCDH9-205ENST00000614931 JPH4Q96JJ6 628 aa13.28□□□□□ -0.28
PCDH9-205ENST00000614931 PRG4Q92954 1404 aaPredicted RBP13.27□□□□□ -0.29
PCDH9-205ENST00000614931 TRHP20396 242 aaPredicted RBP13.26□□□□□ -0.29
PCDH9-205ENST00000614931 PRXQ9BXM0 1461 aa13.26□□□□□ -0.29
PCDH9-205ENST00000614931 KIAA0586Q9BVV6 1533 aa13.25□□□□□ -0.29
PCDH9-205ENST00000614931 CARMIL1Q5VZK9 1371 aa13.25□□□□□ -0.29
PCDH9-205ENST00000614931 RAPGEF2Q9Y4G8 1499 aa13.23□□□□□ -0.29
PCDH9-205ENST00000614931 LOC105371045A0A1W2PR82 267 aa13.2□□□□□ -0.3
PCDH9-205ENST00000614931 EHMT2Q96KQ7 1210 aa13.2□□□□□ -0.3
PCDH9-205ENST00000614931 GOLGA3Q08378 1498 aa13.2□□□□□ -0.3
PCDH9-205ENST00000614931 CTTNBP2Q8WZ74 1663 aa13.16□□□□□ -0.3
PCDH9-205ENST00000614931 IQGAP2Q13576 1575 aa13.14□□□□□ -0.31
PCDH9-205ENST00000614931 ADCY10Q96PN6 1610 aa13.11□□□□□ -0.31
PCDH9-205ENST00000614931 CARMIL2Q6F5E8 1435 aa13.1□□□□□ -0.31
PCDH9-205ENST00000614931 TNIKQ9UKE5 1360 aa13.08□□□□□ -0.31
PCDH9-205ENST00000614931 PTPRGP23470 1445 aa13.08□□□□□ -0.32
PCDH9-205ENST00000614931 MAPKBP1O60336 1514 aa13.08□□□□□ -0.32
PCDH9-205ENST00000614931 UGGT2Q9NYU1 1516 aa13.08□□□□□ -0.32
PCDH9-205ENST00000614931 KIF13AQ9H1H9 1805 aa13.07□□□□□ -0.32
PCDH9-205ENST00000614931 NPM1P06748 294 aaKnown RBP eCLIP13.07□□□□□ -0.32
PCDH9-205ENST00000614931 DISP1Q96F81 1524 aa13.07□□□□□ -0.32
PCDH9-205ENST00000614931 UBTFP17480 764 aaKnown RBP13.06□□□□□ -0.32
PCDH9-205ENST00000614931 ABCC10Q5T3U5 1492 aa13.03□□□□□ -0.32
PCDH9-205ENST00000614931 CEP162Q5TB80 1403 aa13.02□□□□□ -0.33
PCDH9-205ENST00000614931 UHRF1BP1LA0JNW5 1464 aa13.02□□□□□ -0.33
PCDH9-205ENST00000614931 KIAA0556O60303 1618 aa13.02□□□□□ -0.33
PCDH9-205ENST00000614931 TTBK1Q5TCY1 1321 aaPredicted RBP13.01□□□□□ -0.33
PCDH9-205ENST00000614931 DIP2BQ9P265 1576 aa13□□□□□ -0.33
PCDH9-205ENST00000614931 ABCC2Q92887 1545 aa13□□□□□ -0.33
PCDH9-205ENST00000614931 UACAQ9BZF9 1416 aa13□□□□□ -0.33
PCDH9-205ENST00000614931 FAM69CQ0P6D2 419 aa12.99□□□□□ -0.33
PCDH9-205ENST00000614931 SAMD9Q5K651 1589 aa12.98□□□□□ -0.33
PCDH9-205ENST00000614931 ARHGAP35Q9NRY4 1499 aa12.96□□□□□ -0.34
PCDH9-205ENST00000614931 CLIP1P30622 1438 aa12.96□□□□□ -0.34
PCDH9-205ENST00000614931 KDM5BQ9UGL1 1544 aa12.95□□□□□ -0.34
PCDH9-205ENST00000614931 RANGAP1P46060 587 aaPredicted RBP12.94□□□□□ -0.34
PCDH9-205ENST00000614931 ASXL2Q76L83 1435 aa12.94□□□□□ -0.34
PCDH9-205ENST00000614931 PLB1Q6P1J6 1458 aa12.93□□□□□ -0.34
PCDH9-205ENST00000614931 EFCAB5A4FU69 1503 aa12.93□□□□□ -0.34
PCDH9-205ENST00000614931 ZCCHC11Q5TAX3 1644 aaKnown RBP12.91□□□□□ -0.34
PCDH9-205ENST00000614931 GLI2P10070 1586 aa12.9□□□□□ -0.34
PCDH9-205ENST00000614931 ABCA8O94911 1581 aa12.9□□□□□ -0.35
PCDH9-205ENST00000614931 FHOD3Q2V2M9 1422 aa12.88□□□□□ -0.35
PCDH9-205ENST00000614931 TSPOAP1O95153 1857 aa12.88□□□□□ -0.35
PCDH9-205ENST00000614931 EPRSP07814 1512 aaKnown RBP12.86□□□□□ -0.35
PCDH9-205ENST00000614931 P3H3Q8IVL6 736 aa12.85□□□□□ -0.35
PCDH9-205ENST00000614931 PPRC1Q5VV67 1664 aaKnown RBP12.85□□□□□ -0.35
PCDH9-205ENST00000614931 WDR7Q9Y4E6 1490 aa12.84□□□□□ -0.35
PCDH9-205ENST00000614931 KDM6BO15054 1643 aa12.84□□□□□ -0.35
PCDH9-205ENST00000614931 MAP3K4Q9Y6R4 1608 aa12.84□□□□□ -0.35
PCDH9-205ENST00000614931 PCF11O94913 1555 aaKnown RBP12.83□□□□□ -0.36
PCDH9-205ENST00000614931 VPS8Q8N3P4 1428 aa12.82□□□□□ -0.36
PCDH9-205ENST00000614931 LRRIQ1Q96JM4 1722 aa12.82□□□□□ -0.36
PCDH9-205ENST00000614931 ATP10BO94823 1461 aa12.79□□□□□ -0.36
PCDH9-205ENST00000614931 RAPGEF6Q8TEU7 1601 aa12.78□□□□□ -0.36
PCDH9-205ENST00000614931 TEX14Q8IWB6 1497 aa12.77□□□□□ -0.37
PCDH9-205ENST00000614931 KCNH8Q96L42 1107 aa12.76□□□□□ -0.37
PCDH9-205ENST00000614931 CFAP43Q8NDM7 1665 aa12.76□□□□□ -0.37
PCDH9-205ENST00000614931 FMN1Q68DA7 1419 aa12.75□□□□□ -0.37
PCDH9-205ENST00000614931 MAGI3Q5TCQ9 1506 aa12.74□□□□□ -0.37
PCDH9-205ENST00000614931 COL17A1Q9UMD9 1497 aaPredicted RBP12.74□□□□□ -0.37
PCDH9-205ENST00000614931 CD109Q6YHK3 1445 aa12.74□□□□□ -0.37
PCDH9-205ENST00000614931 ARID3CA6NKF2 412 aa12.74□□□□□ -0.37
PCDH9-205ENST00000614931 AEBP2Q6ZN18 517 aaPredicted RBP12.74□□□□□ -0.37
PCDH9-205ENST00000614931 NUP153P49790 1475 aaKnown RBP12.73□□□□□ -0.37
PCDH9-205ENST00000614931 FYCO1Q9BQS8 1478 aa12.73□□□□□ -0.37
PCDH9-205ENST00000614931 CASKIN1Q8WXD9 1431 aa12.73□□□□□ -0.37
PCDH9-205ENST00000614931 HECW1Q76N89 1606 aa12.73□□□□□ -0.37
PCDH9-205ENST00000614931 ABCA9Q8IUA7 1624 aa12.7□□□□□ -0.38
PCDH9-205ENST00000614931 TIAM1Q13009 1591 aa12.69□□□□□ -0.38
PCDH9-205ENST00000614931 CDK13Q14004 1512 aaKnown RBP12.68□□□□□ -0.38
PCDH9-205ENST00000614931 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.67□□□□□ -0.38
PCDH9-205ENST00000614931 HNRNPUL2Q1KMD3 747 aaKnown RBP12.67□□□□□ -0.38
PCDH9-205ENST00000614931 KDM4FA0A1W2PPD8 638 aa12.65□□□□□ -0.38
PCDH9-205ENST00000614931 MAP3K1Q13233 1512 aa12.64□□□□□ -0.39
PCDH9-205ENST00000614931 ARAP3Q8WWN8 1544 aa12.64□□□□□ -0.39
PCDH9-205ENST00000614931 PLEKHD1A6NEE1 506 aa12.64□□□□□ -0.39
PCDH9-205ENST00000614931 PHLDB1Q86UU1 1377 aa12.64□□□□□ -0.39
PCDH9-205ENST00000614931 CCDC18Q5T9S5 1454 aa12.63□□□□□ -0.39
PCDH9-205ENST00000614931 ATP1B4Q9UN42 357 aaPredicted RBP12.62□□□□□ -0.39
PCDH9-205ENST00000614931 PPARGC1BQ86YN6 1023 aaKnown RBP12.61□□□□□ -0.39
PCDH9-205ENST00000614931 NEO1Q92859 1461 aa12.6□□□□□ -0.39
PCDH9-205ENST00000614931 LRRC9Q6ZRR7 1453 aa12.59□□□□□ -0.39
PCDH9-205ENST00000614931 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.59□□□□□ -0.39
PCDH9-205ENST00000614931 KANK4Q5T7N3 995 aaPredicted RBP12.59□□□□□ -0.39
PCDH9-205ENST00000614931 ADGRL1O94910 1474 aa12.58□□□□□ -0.4
PCDH9-205ENST00000614931 EHBP1L1Q8N3D4 1523 aa12.57□□□□□ -0.4
PCDH9-205ENST00000614931 TTC37Q6PGP7 1564 aa12.56□□□□□ -0.4
PCDH9-205ENST00000614931 KIF14Q15058 1648 aa12.55□□□□□ -0.4
PCDH9-205ENST00000614931 SUPT6HQ7KZ85 1726 aaKnown RBP12.54□□□□□ -0.4
PCDH9-205ENST00000614931 RAPGEF3O95398 923 aa12.54□□□□□ -0.4
PCDH9-205ENST00000614931 CDK11AQ9UQ88 783 aaPredicted RBP12.54□□□□□ -0.4
PCDH9-205ENST00000614931 FRMPD1Q5SYB0 1578 aa12.54□□□□□ -0.4
PCDH9-205ENST00000614931 AKNAQ7Z591 1439 aa12.54□□□□□ -0.4
PCDH9-205ENST00000614931 FANCAO15360 1455 aa12.53□□□□□ -0.4
PCDH9-205ENST00000614931 CFAP74Q9C0B2 1584 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms