RNA–Protein interactions for RNA: ENST00000605424.5

MMP28-201, Transcript of matrix metallopeptidase 28, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MMP28, Length 1,928 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28-201ENST00000605424 FHAD1B1AJZ9 1412 aa30.01■■■□□ 2.39
MMP28-201ENST00000605424 CTTNBP2Q8WZ74 1663 aa30.01■■■□□ 2.39
MMP28-201ENST00000605424 TDRD9Q8NDG6 1382 aaKnown RBP30■■■□□ 2.39
MMP28-201ENST00000605424 IFT140Q96RY7 1462 aa29.98■■■□□ 2.39
MMP28-201ENST00000605424 KANK4Q5T7N3 995 aaPredicted RBP29.97■■■□□ 2.39
MMP28-201ENST00000605424 ZNF608Q9ULD9 1512 aaPredicted RBP29.96■■■□□ 2.39
MMP28-201ENST00000605424 TIAM1Q13009 1591 aa29.91■■■□□ 2.38
MMP28-201ENST00000605424 RRBP1Q9P2E9 1410 aaKnown RBP29.9■■■□□ 2.38
MMP28-201ENST00000605424 HNRNPUL2Q1KMD3 747 aaKnown RBP29.9■■■□□ 2.38
MMP28-201ENST00000605424 AQRO60306 1485 aaKnown RBP eCLIP29.88■■■□□ 2.37
MMP28-201ENST00000605424 FYCO1Q9BQS8 1478 aa29.8■■■□□ 2.36
MMP28-201ENST00000605424 PBRM1Q86U86 1689 aa29.8■■■□□ 2.36
MMP28-201ENST00000605424 CFAP43Q8NDM7 1665 aa29.79■■■□□ 2.36
MMP28-201ENST00000605424 PCF11O94913 1555 aaKnown RBP29.78■■■□□ 2.36
MMP28-201ENST00000605424 LRRC9Q6ZRR7 1453 aa29.78■■■□□ 2.36
MMP28-201ENST00000605424 FHOD3Q2V2M9 1422 aa29.77■■■□□ 2.36
MMP28-201ENST00000605424 CASKIN1Q8WXD9 1431 aa29.77■■■□□ 2.36
MMP28-201ENST00000605424 EIF4G3O43432 1585 aaKnown RBP29.76■■■□□ 2.36
MMP28-201ENST00000605424 FMN1Q68DA7 1419 aa29.76■■■□□ 2.35
MMP28-201ENST00000605424 SAMD9Q5K651 1589 aa29.75■■■□□ 2.35
MMP28-201ENST00000605424 CCNB3Q8WWL7 1395 aa29.74■■■□□ 2.35
MMP28-201ENST00000605424 GRIN2BQ13224 1484 aa29.71■■■□□ 2.35
MMP28-201ENST00000605424 P3H3Q8IVL6 736 aa29.71■■■□□ 2.35
MMP28-201ENST00000605424 ADAMTS12P58397 1594 aa29.68■■■□□ 2.34
MMP28-201ENST00000605424 SNAPC4Q5SXM2 1469 aa29.61■■■□□ 2.33
MMP28-201ENST00000605424 CLSPNQ9HAW4 1339 aa29.61■■■□□ 2.33
MMP28-201ENST00000605424 IQGAP2Q13576 1575 aa29.54■■■□□ 2.32
MMP28-201ENST00000605424 ATP1B4Q9UN42 357 aaPredicted RBP29.53■■■□□ 2.32
MMP28-201ENST00000605424 PHLDB1Q86UU1 1377 aa29.52■■■□□ 2.32
MMP28-201ENST00000605424 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.47■■■□□ 2.31
MMP28-201ENST00000605424 DHX57Q6P158 1386 aaKnown RBP29.46■■■□□ 2.31
MMP28-201ENST00000605424 UGGT2Q9NYU1 1516 aa29.43■■■□□ 2.3
MMP28-201ENST00000605424 MAGI1Q96QZ7 1491 aaPredicted RBP29.42■■■□□ 2.3
MMP28-201ENST00000605424 KIAA0586Q9BVV6 1533 aa29.39■■■□□ 2.3
MMP28-201ENST00000605424 CCDC18Q5T9S5 1454 aa29.38■■■□□ 2.29
MMP28-201ENST00000605424 MTUS2Q5JR59 1369 aa29.38■■■□□ 2.29
MMP28-201ENST00000605424 LRRIQ1Q96JM4 1722 aa29.37■■■□□ 2.29
MMP28-201ENST00000605424 FBLN2P98095 1184 aa29.35■■■□□ 2.29
MMP28-201ENST00000605424 GRIN2AQ12879 1464 aa29.35■■■□□ 2.29
MMP28-201ENST00000605424 SYNJ2O15056 1496 aa29.34■■■□□ 2.29
MMP28-201ENST00000605424 HECW1Q76N89 1606 aa29.34■■■□□ 2.29
MMP28-201ENST00000605424 EHBP1L1Q8N3D4 1523 aa29.33■■■□□ 2.29
MMP28-201ENST00000605424 CHMP7Q8WUX9 453 aaPredicted RBP29.32■■■□□ 2.28
MMP28-201ENST00000605424 ITGAEP38570 1179 aa29.3■■■□□ 2.28
MMP28-201ENST00000605424 SETD5Q9C0A6 1442 aa29.3■■■□□ 2.28
MMP28-201ENST00000605424 FAM50AQ14320 339 aaKnown RBP29.3■■■□□ 2.28
MMP28-201ENST00000605424 ZNF316A6NFI3 1004 aaPredicted RBP29.28■■■□□ 2.28
MMP28-201ENST00000605424 FGD6Q6ZV73 1430 aa29.28■■■□□ 2.28
MMP28-201ENST00000605424 RAB3GAP2Q9H2M9 1393 aa29.28■■■□□ 2.28
MMP28-201ENST00000605424 SUPT6HQ7KZ85 1726 aaKnown RBP29.28■■■□□ 2.28
MMP28-201ENST00000605424 CHD1O14646 1710 aa29.27■■■□□ 2.28
MMP28-201ENST00000605424 NCOA2Q15596 1464 aa29.23■■■□□ 2.27
MMP28-201ENST00000605424 KIAA0556O60303 1618 aa29.22■■■□□ 2.27
MMP28-201ENST00000605424 ARHGEF11O15085 1522 aa29.21■■■□□ 2.27
MMP28-201ENST00000605424 MYOM3Q5VTT5 1437 aa29.2■■■□□ 2.27
MMP28-201ENST00000605424 DIEXFQ68CQ4 756 aaKnown RBP29.2■■■□□ 2.27
MMP28-201ENST00000605424 EPRSP07814 1512 aaKnown RBP29.2■■■□□ 2.26
MMP28-201ENST00000605424 DISP1Q96F81 1524 aa29.2■■■□□ 2.26
MMP28-201ENST00000605424 CEP170Q5SW79 1584 aa29.15■■■□□ 2.26
MMP28-201ENST00000605424 MAGI3Q5TCQ9 1506 aa29.13■■■□□ 2.25
MMP28-201ENST00000605424 NUP160Q12769 1436 aa29.11■■■□□ 2.25
MMP28-201ENST00000605424 MAPKBP1O60336 1514 aa29.06■■■□□ 2.24
MMP28-201ENST00000605424 PTPN23Q9H3S7 1636 aa29.04■■■□□ 2.24
MMP28-201ENST00000605424 RAPGEF6Q8TEU7 1601 aa29.04■■■□□ 2.24
MMP28-201ENST00000605424 TCOF1Q13428 1488 aaKnown RBP29.04■■■□□ 2.24
MMP28-201ENST00000605424 CDK13Q14004 1512 aaKnown RBP29.03■■■□□ 2.24
MMP28-201ENST00000605424 MIA2Q96PC5 1412 aa29.01■■■□□ 2.24
MMP28-201ENST00000605424 HFM1A2PYH4 1435 aa29.01■■■□□ 2.23
MMP28-201ENST00000605424 CARMIL2Q6F5E8 1435 aa29.01■■■□□ 2.23
MMP28-201ENST00000605424 OSCARQ8IYS5 282 aa29■■■□□ 2.23
MMP28-201ENST00000605424 NUP153P49790 1475 aaKnown RBP28.99■■■□□ 2.23
MMP28-201ENST00000605424 PTPRKQ15262 1439 aa28.96■■■□□ 2.23
MMP28-201ENST00000605424 CDK11AQ9UQ88 783 aaPredicted RBP28.95■■■□□ 2.23
MMP28-201ENST00000605424 CLASP1Q7Z460 1538 aa28.94■■■□□ 2.22
MMP28-201ENST00000605424 JPH4Q96JJ6 628 aa28.94■■■□□ 2.22
MMP28-201ENST00000605424 TIMELESSQ9UNS1 1208 aa28.91■■■□□ 2.22
MMP28-201ENST00000605424 NAIPQ13075 1403 aa28.88■■■□□ 2.21
MMP28-201ENST00000605424 AKNAQ7Z591 1439 aa28.87■■■□□ 2.21
MMP28-201ENST00000605424 UACAQ9BZF9 1416 aa28.85■■■□□ 2.21
MMP28-201ENST00000605424 TROQ12816 1431 aaPredicted RBP28.81■■■□□ 2.2
MMP28-201ENST00000605424 PLB1Q6P1J6 1458 aa28.8■■■□□ 2.2
MMP28-201ENST00000605424 GCC2Q8IWJ2 1684 aa28.79■■■□□ 2.2
MMP28-201ENST00000605424 SHROOM2Q13796 1616 aa28.79■■■□□ 2.2
MMP28-201ENST00000605424 ARID3CA6NKF2 412 aa28.78■■■□□ 2.2
MMP28-201ENST00000605424 ERCC6L2Q5T890 1561 aa28.77■■■□□ 2.2
MMP28-201ENST00000605424 ACIN1Q9UKV3 1341 aaKnown RBP28.77■■■□□ 2.2
MMP28-201ENST00000605424 ABCA8O94911 1581 aa28.76■■■□□ 2.19
MMP28-201ENST00000605424 ADCY10Q96PN6 1610 aa28.75■■■□□ 2.19
MMP28-201ENST00000605424 PRG4Q92954 1404 aaPredicted RBP28.74■■■□□ 2.19
MMP28-201ENST00000605424 ROCK1Q13464 1354 aa28.7■■■□□ 2.18
MMP28-201ENST00000605424 ITSN2Q9NZM3 1697 aa28.7■■■□□ 2.18
MMP28-201ENST00000605424 SIN3AQ96ST3 1273 aa28.69■■■□□ 2.18
MMP28-201ENST00000605424 DNMT1P26358 1616 aaKnown RBP28.69■■■□□ 2.18
MMP28-201ENST00000605424 DAPK1P53355 1430 aa28.66■■■□□ 2.18
MMP28-201ENST00000605424 NEUROD1Q13562 356 aa28.65■■■□□ 2.18
MMP28-201ENST00000605424 RRP7BPQ9NSQ0 103 aa28.63■■■□□ 2.17
MMP28-201ENST00000605424 CHIC2Q9UKJ5 165 aa28.62■■■□□ 2.17
MMP28-201ENST00000605424 ABCC5O15440 1437 aa28.61■■■□□ 2.17
MMP28-201ENST00000605424 GPATCH8Q9UKJ3 1502 aaKnown RBP28.61■■■□□ 2.17
MMP28-201ENST00000605424 ATP10BO94823 1461 aa28.6■■■□□ 2.17
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms